Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17135

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17130 and ABID97_RS17135 are separated by 38 nucleotidesABID97_RS17135 and ABID97_RS17140 are separated by 24 nucleotides ABID97_RS17130: ABID97_RS17130 - outer membrane protein assembly factor BamA, at 3,538,919 to 3,541,354 _RS17130 ABID97_RS17135: ABID97_RS17135 - RIP metalloprotease RseP, at 3,541,393 to 3,542,763 _RS17135 ABID97_RS17140: ABID97_RS17140 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,542,788 to 3,543,975 _RS17140 Position (kb) 3541 3542 3543Strain fitness (log2 ratio) -2 -1 0 1 2at 3541.394 kb on + strandat 3541.394 kb on + strandat 3541.526 kb on + strandat 3541.526 kb on + strandat 3541.526 kb on + strandat 3541.527 kb on - strandat 3541.529 kb on + strandat 3541.529 kb on + strandat 3541.529 kb on + strandat 3541.530 kb on - strand, within ABID97_RS17135at 3541.530 kb on - strand, within ABID97_RS17135at 3541.530 kb on - strand, within ABID97_RS17135at 3541.609 kb on + strand, within ABID97_RS17135at 3541.616 kb on + strand, within ABID97_RS17135at 3541.617 kb on - strand, within ABID97_RS17135at 3541.826 kb on + strand, within ABID97_RS17135at 3541.826 kb on + strand, within ABID97_RS17135at 3541.827 kb on - strand, within ABID97_RS17135at 3541.827 kb on - strand, within ABID97_RS17135at 3541.827 kb on - strand, within ABID97_RS17135at 3542.414 kb on + strand, within ABID97_RS17135at 3542.414 kb on + strand, within ABID97_RS17135at 3542.414 kb on + strand, within ABID97_RS17135at 3542.415 kb on - strand, within ABID97_RS17135at 3542.415 kb on - strand, within ABID97_RS17135at 3542.556 kb on - strand, within ABID97_RS17135at 3542.556 kb on - strand, within ABID97_RS17135at 3542.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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3,541,394 + -0.1
3,541,394 + +0.2
3,541,526 + +0.9
3,541,526 + -0.3
3,541,526 + -1.8
3,541,527 - +2.0
3,541,529 + -0.9
3,541,529 + -0.8
3,541,529 + -1.3
3,541,530 - ABID97_RS17135 0.10 -0.6
3,541,530 - ABID97_RS17135 0.10 -0.7
3,541,530 - ABID97_RS17135 0.10 -0.2
3,541,609 + ABID97_RS17135 0.16 +0.1
3,541,616 + ABID97_RS17135 0.16 -0.5
3,541,617 - ABID97_RS17135 0.16 +0.2
3,541,826 + ABID97_RS17135 0.32 -0.8
3,541,826 + ABID97_RS17135 0.32 -0.9
3,541,827 - ABID97_RS17135 0.32 -1.5
3,541,827 - ABID97_RS17135 0.32 -0.4
3,541,827 - ABID97_RS17135 0.32 -0.7
3,542,414 + ABID97_RS17135 0.74 -0.9
3,542,414 + ABID97_RS17135 0.74 -0.6
3,542,414 + ABID97_RS17135 0.74 -0.9
3,542,415 - ABID97_RS17135 0.75 -0.5
3,542,415 - ABID97_RS17135 0.75 -0.8
3,542,556 - ABID97_RS17135 0.85 +0.1
3,542,556 - ABID97_RS17135 0.85 -0.6
3,542,706 - -1.0

Or see this region's nucleotide sequence