Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15650

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15645 and ABID97_RS15650 overlap by 4 nucleotidesABID97_RS15650 and ABID97_RS15655 overlap by 4 nucleotides ABID97_RS15645: ABID97_RS15645 - amino acid ABC transporter substrate-binding protein, at 3,234,509 to 3,235,543 _RS15645 ABID97_RS15650: ABID97_RS15650 - ABC transporter permease subunit, at 3,235,540 to 3,236,538 _RS15650 ABID97_RS15655: ABID97_RS15655 - amino acid ABC transporter permease, at 3,236,535 to 3,237,593 _RS15655 Position (kb) 3235 3236 3237Strain fitness (log2 ratio) -1 0 1 2 3at 3234.884 kb on + strand, within ABID97_RS15645at 3234.885 kb on - strand, within ABID97_RS15645at 3234.887 kb on + strand, within ABID97_RS15645at 3234.888 kb on - strand, within ABID97_RS15645at 3234.888 kb on - strand, within ABID97_RS15645at 3235.431 kb on - strand, within ABID97_RS15645at 3235.431 kb on - strand, within ABID97_RS15645at 3235.523 kb on + strandat 3235.523 kb on + strandat 3235.523 kb on + strandat 3235.524 kb on - strandat 3235.524 kb on - strandat 3235.524 kb on - strandat 3235.790 kb on + strand, within ABID97_RS15650at 3236.008 kb on + strand, within ABID97_RS15650at 3236.138 kb on - strand, within ABID97_RS15650at 3236.462 kb on - strandat 3236.462 kb on - strandat 3237.084 kb on + strand, within ABID97_RS15655at 3237.487 kb on - strand, within ABID97_RS15655at 3237.498 kb on + strandat 3237.498 kb on + strandat 3237.519 kb on + strandat 3237.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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3,234,884 + ABID97_RS15645 0.36 +0.1
3,234,885 - ABID97_RS15645 0.36 -0.4
3,234,887 + ABID97_RS15645 0.37 -1.1
3,234,888 - ABID97_RS15645 0.37 +0.2
3,234,888 - ABID97_RS15645 0.37 +0.1
3,235,431 - ABID97_RS15645 0.89 +3.5
3,235,431 - ABID97_RS15645 0.89 -0.2
3,235,523 + -1.5
3,235,523 + -0.3
3,235,523 + -0.1
3,235,524 - +0.0
3,235,524 - -0.1
3,235,524 - +1.1
3,235,790 + ABID97_RS15650 0.25 -0.6
3,236,008 + ABID97_RS15650 0.47 -0.2
3,236,138 - ABID97_RS15650 0.60 -0.8
3,236,462 - +0.3
3,236,462 - +0.0
3,237,084 + ABID97_RS15655 0.52 -0.3
3,237,487 - ABID97_RS15655 0.90 -0.9
3,237,498 + -0.3
3,237,498 + +0.8
3,237,519 + +0.5
3,237,520 - +0.4

Or see this region's nucleotide sequence