Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15645 and ABID97_RS15650 overlap by 4 nucleotides ABID97_RS15650 and ABID97_RS15655 overlap by 4 nucleotides
ABID97_RS15645: ABID97_RS15645 - amino acid ABC transporter substrate-binding protein, at 3,234,509 to 3,235,543
_RS15645
ABID97_RS15650: ABID97_RS15650 - ABC transporter permease subunit, at 3,235,540 to 3,236,538
_RS15650
ABID97_RS15655: ABID97_RS15655 - amino acid ABC transporter permease, at 3,236,535 to 3,237,593
_RS15655
Position (kb)
3235
3236
3237 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3234.884 kb on + strand, within ABID97_RS15645 at 3234.885 kb on - strand, within ABID97_RS15645 at 3234.887 kb on + strand, within ABID97_RS15645 at 3234.888 kb on - strand, within ABID97_RS15645 at 3234.888 kb on - strand, within ABID97_RS15645 at 3235.431 kb on - strand, within ABID97_RS15645 at 3235.431 kb on - strand, within ABID97_RS15645 at 3235.523 kb on + strand at 3235.523 kb on + strand at 3235.523 kb on + strand at 3235.524 kb on - strand at 3235.524 kb on - strand at 3235.524 kb on - strand at 3235.790 kb on + strand, within ABID97_RS15650 at 3236.008 kb on + strand, within ABID97_RS15650 at 3236.138 kb on - strand, within ABID97_RS15650 at 3236.462 kb on - strand at 3236.462 kb on - strand at 3237.084 kb on + strand, within ABID97_RS15655 at 3237.487 kb on - strand, within ABID97_RS15655 at 3237.498 kb on + strand at 3237.498 kb on + strand at 3237.519 kb on + strand at 3237.520 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 3,234,884 + ABID97_RS15645 0.36 +0.1 3,234,885 - ABID97_RS15645 0.36 -0.4 3,234,887 + ABID97_RS15645 0.37 -1.1 3,234,888 - ABID97_RS15645 0.37 +0.2 3,234,888 - ABID97_RS15645 0.37 +0.1 3,235,431 - ABID97_RS15645 0.89 +3.5 3,235,431 - ABID97_RS15645 0.89 -0.2 3,235,523 + -1.5 3,235,523 + -0.3 3,235,523 + -0.1 3,235,524 - +0.0 3,235,524 - -0.1 3,235,524 - +1.1 3,235,790 + ABID97_RS15650 0.25 -0.6 3,236,008 + ABID97_RS15650 0.47 -0.2 3,236,138 - ABID97_RS15650 0.60 -0.8 3,236,462 - +0.3 3,236,462 - +0.0 3,237,084 + ABID97_RS15655 0.52 -0.3 3,237,487 - ABID97_RS15655 0.90 -0.9 3,237,498 + -0.3 3,237,498 + +0.8 3,237,519 + +0.5 3,237,520 - +0.4
Or see this region's nucleotide sequence