Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06800

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06790 and ABID97_RS06795 overlap by 4 nucleotidesABID97_RS06795 and ABID97_RS06800 are separated by 20 nucleotidesABID97_RS06800 and ABID97_RS06805 are separated by 21 nucleotidesABID97_RS06805 and ABID97_RS06810 are separated by 21 nucleotides ABID97_RS06790: ABID97_RS06790 - DUF4123 domain-containing protein, at 1,432,900 to 1,433,868 _RS06790 ABID97_RS06795: ABID97_RS06795 - DUF3304 domain-containing protein, at 1,433,865 to 1,434,446 _RS06795 ABID97_RS06800: ABID97_RS06800 - DUF3304 domain-containing protein, at 1,434,467 to 1,435,048 _RS06800 ABID97_RS06805: ABID97_RS06805 - DUF3304 domain-containing protein, at 1,435,070 to 1,435,651 _RS06805 ABID97_RS06810: ABID97_RS06810 - DUF2235 domain-containing protein, at 1,435,673 to 1,437,619 _RS06810 Position (kb) 1434 1435 1436Strain fitness (log2 ratio) -2 -1 0 1at 1433.655 kb on + strand, within ABID97_RS06790at 1433.656 kb on - strand, within ABID97_RS06790at 1434.207 kb on + strand, within ABID97_RS06795at 1434.208 kb on - strand, within ABID97_RS06795at 1434.309 kb on + strand, within ABID97_RS06795at 1434.310 kb on - strand, within ABID97_RS06795at 1434.379 kb on - strand, within ABID97_RS06795at 1434.445 kb on - strandat 1434.678 kb on - strand, within ABID97_RS06800at 1434.678 kb on - strand, within ABID97_RS06800at 1434.680 kb on + strand, within ABID97_RS06800at 1434.680 kb on + strand, within ABID97_RS06800at 1434.680 kb on + strand, within ABID97_RS06800at 1434.680 kb on + strand, within ABID97_RS06800at 1434.680 kb on + strand, within ABID97_RS06800at 1434.912 kb on - strand, within ABID97_RS06800at 1434.931 kb on - strand, within ABID97_RS06800at 1435.175 kb on - strand, within ABID97_RS06805at 1435.429 kb on + strand, within ABID97_RS06805at 1435.940 kb on + strand, within ABID97_RS06810at 1435.953 kb on - strand, within ABID97_RS06810at 1435.953 kb on - strand, within ABID97_RS06810at 1435.953 kb on - strand, within ABID97_RS06810at 1435.953 kb on - strand, within ABID97_RS06810

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,433,655 + ABID97_RS06790 0.78 -0.7
1,433,656 - ABID97_RS06790 0.78 +0.1
1,434,207 + ABID97_RS06795 0.59 +0.3
1,434,208 - ABID97_RS06795 0.59 -2.1
1,434,309 + ABID97_RS06795 0.76 -0.1
1,434,310 - ABID97_RS06795 0.76 +0.5
1,434,379 - ABID97_RS06795 0.88 -1.0
1,434,445 - -0.3
1,434,678 - ABID97_RS06800 0.36 -1.5
1,434,678 - ABID97_RS06800 0.36 -0.5
1,434,680 + ABID97_RS06800 0.37 -0.2
1,434,680 + ABID97_RS06800 0.37 +0.1
1,434,680 + ABID97_RS06800 0.37 -2.1
1,434,680 + ABID97_RS06800 0.37 +0.1
1,434,680 + ABID97_RS06800 0.37 -1.2
1,434,912 - ABID97_RS06800 0.76 -0.2
1,434,931 - ABID97_RS06800 0.80 +0.0
1,435,175 - ABID97_RS06805 0.18 +0.1
1,435,429 + ABID97_RS06805 0.62 -0.4
1,435,940 + ABID97_RS06810 0.14 +1.0
1,435,953 - ABID97_RS06810 0.14 +0.2
1,435,953 - ABID97_RS06810 0.14 +0.1
1,435,953 - ABID97_RS06810 0.14 +0.7
1,435,953 - ABID97_RS06810 0.14 -0.5

Or see this region's nucleotide sequence