Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0307

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0306 and Psyr_0307 are separated by 586 nucleotidesPsyr_0307 and Psyr_0308 are separated by 288 nucleotides Psyr_0306: Psyr_0306 - TonB, C-terminal, at 326,643 to 327,308 _0306 Psyr_0307: Psyr_0307 - hypothetical protein, at 327,895 to 328,398 _0307 Psyr_0308: Psyr_0308 - hypothetical protein, at 328,687 to 329,424 _0308 Position (kb) 327 328 329Strain fitness (log2 ratio) -2 -1 0 1 2at 326.895 kb on - strand, within Psyr_0306at 326.895 kb on - strand, within Psyr_0306at 327.080 kb on + strand, within Psyr_0306at 327.081 kb on - strand, within Psyr_0306at 327.235 kb on - strand, within Psyr_0306at 327.243 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.355 kb on - strandat 327.355 kb on - strandat 327.355 kb on - strandat 327.403 kb on + strandat 327.403 kb on + strandat 327.404 kb on - strandat 327.585 kb on + strandat 327.586 kb on - strandat 327.669 kb on + strandat 327.669 kb on + strandat 327.670 kb on - strandat 327.670 kb on - strandat 327.670 kb on - strandat 327.702 kb on - strandat 327.780 kb on - strandat 327.813 kb on + strandat 327.813 kb on + strandat 327.837 kb on - strandat 327.837 kb on - strandat 328.009 kb on - strand, within Psyr_0307at 328.044 kb on + strand, within Psyr_0307at 328.060 kb on - strand, within Psyr_0307at 328.118 kb on - strand, within Psyr_0307at 328.118 kb on - strand, within Psyr_0307at 328.178 kb on - strand, within Psyr_0307at 328.186 kb on + strand, within Psyr_0307at 328.186 kb on + strand, within Psyr_0307at 328.186 kb on + strand, within Psyr_0307at 328.186 kb on + strand, within Psyr_0307at 328.186 kb on + strand, within Psyr_0307at 328.187 kb on - strand, within Psyr_0307at 328.215 kb on - strand, within Psyr_0307at 328.215 kb on - strand, within Psyr_0307at 328.257 kb on + strand, within Psyr_0307at 328.257 kb on + strand, within Psyr_0307at 328.257 kb on + strand, within Psyr_0307at 328.258 kb on - strand, within Psyr_0307at 328.258 kb on - strand, within Psyr_0307at 328.288 kb on + strand, within Psyr_0307at 328.320 kb on + strand, within Psyr_0307at 328.362 kb on + strandat 328.363 kb on - strandat 328.411 kb on - strandat 328.428 kb on - strandat 328.436 kb on + strandat 328.437 kb on - strandat 328.437 kb on - strandat 328.439 kb on + strandat 328.439 kb on + strandat 328.440 kb on - strandat 328.440 kb on - strandat 328.443 kb on + strandat 328.444 kb on - strandat 328.444 kb on - strandat 328.471 kb on + strandat 328.509 kb on + strandat 328.509 kb on + strandat 328.509 kb on + strandat 328.510 kb on - strandat 328.510 kb on - strandat 328.574 kb on + strandat 328.575 kb on - strandat 328.584 kb on - strandat 328.584 kb on - strandat 328.966 kb on + strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 329.098 kb on + strand, within Psyr_0308at 329.098 kb on + strand, within Psyr_0308at 329.099 kb on - strand, within Psyr_0308at 329.099 kb on - strand, within Psyr_0308at 329.099 kb on - strand, within Psyr_0308at 329.113 kb on + strand, within Psyr_0308at 329.168 kb on + strand, within Psyr_0308at 329.168 kb on + strand, within Psyr_0308at 329.169 kb on - strand, within Psyr_0308at 329.169 kb on - strand, within Psyr_0308at 329.221 kb on + strand, within Psyr_0308at 329.222 kb on - strand, within Psyr_0308at 329.255 kb on + strand, within Psyr_0308at 329.308 kb on + strand, within Psyr_0308at 329.308 kb on + strand, within Psyr_0308at 329.308 kb on + strand, within Psyr_0308at 329.309 kb on - strand, within Psyr_0308at 329.309 kb on - strand, within Psyr_0308at 329.309 kb on - strand, within Psyr_0308at 329.329 kb on + strand, within Psyr_0308at 329.329 kb on + strand, within Psyr_0308at 329.330 kb on - strand, within Psyr_0308at 329.333 kb on + strand, within Psyr_0308at 329.333 kb on + strand, within Psyr_0308at 329.333 kb on + strand, within Psyr_0308at 329.333 kb on + strand, within Psyr_0308at 329.333 kb on + strand, within Psyr_0308at 329.333 kb on + strand, within Psyr_0308at 329.334 kb on - strand, within Psyr_0308at 329.334 kb on - strand, within Psyr_0308at 329.334 kb on - strand, within Psyr_0308at 329.334 kb on - strand, within Psyr_0308at 329.334 kb on - strand, within Psyr_0308at 329.361 kb on - strandat 329.380 kb on + strandat 329.392 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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326,895 - Psyr_0306 0.38 +1.0
326,895 - Psyr_0306 0.38 -0.8
327,080 + Psyr_0306 0.66 -0.9
327,081 - Psyr_0306 0.66 -1.4
327,235 - Psyr_0306 0.89 -0.4
327,243 + +0.2
327,325 + -1.0
327,325 + -0.7
327,325 + -2.3
327,325 + -0.2
327,325 + +0.1
327,325 + +0.5
327,326 - -0.3
327,326 - +0.9
327,326 - +0.5
327,326 - -0.9
327,355 - +0.3
327,355 - +0.3
327,355 - -0.4
327,403 + +1.0
327,403 + -0.3
327,404 - -1.2
327,585 + +1.4
327,586 - -0.9
327,669 + +0.1
327,669 + -0.5
327,670 - +0.4
327,670 - +0.0
327,670 - -0.0
327,702 - +0.9
327,780 - +0.7
327,813 + -0.3
327,813 + +0.3
327,837 - +1.2
327,837 - -0.6
328,009 - Psyr_0307 0.23 -0.3
328,044 + Psyr_0307 0.30 -0.3
328,060 - Psyr_0307 0.33 -0.4
328,118 - Psyr_0307 0.44 -0.4
328,118 - Psyr_0307 0.44 +0.4
328,178 - Psyr_0307 0.56 -1.2
328,186 + Psyr_0307 0.58 +1.4
328,186 + Psyr_0307 0.58 -0.3
328,186 + Psyr_0307 0.58 -0.1
328,186 + Psyr_0307 0.58 -0.0
328,186 + Psyr_0307 0.58 +0.1
328,187 - Psyr_0307 0.58 -1.0
328,215 - Psyr_0307 0.63 -0.4
328,215 - Psyr_0307 0.63 -0.1
328,257 + Psyr_0307 0.72 -0.0
328,257 + Psyr_0307 0.72 -0.4
328,257 + Psyr_0307 0.72 -2.4
328,258 - Psyr_0307 0.72 -0.4
328,258 - Psyr_0307 0.72 -0.5
328,288 + Psyr_0307 0.78 +0.6
328,320 + Psyr_0307 0.84 -0.1
328,362 + -2.1
328,363 - -1.6
328,411 - +0.6
328,428 - +0.0
328,436 + +0.7
328,437 - -0.3
328,437 - -1.6
328,439 + +0.2
328,439 + +0.3
328,440 - -0.4
328,440 - +1.0
328,443 + +0.5
328,444 - +0.3
328,444 - +0.4
328,471 + +0.4
328,509 + +0.2
328,509 + +0.2
328,509 + -0.8
328,510 - -1.0
328,510 - -1.5
328,574 + -0.1
328,575 - +0.7
328,584 - +0.0
328,584 - +0.3
328,966 + Psyr_0308 0.38 +0.0
328,967 - Psyr_0308 0.38 +0.9
328,967 - Psyr_0308 0.38 -0.7
328,967 - Psyr_0308 0.38 -1.0
328,967 - Psyr_0308 0.38 +0.4
328,967 - Psyr_0308 0.38 -0.4
328,967 - Psyr_0308 0.38 +2.3
329,098 + Psyr_0308 0.56 +0.2
329,098 + Psyr_0308 0.56 -0.4
329,099 - Psyr_0308 0.56 -0.6
329,099 - Psyr_0308 0.56 -0.0
329,099 - Psyr_0308 0.56 +0.7
329,113 + Psyr_0308 0.58 -0.1
329,168 + Psyr_0308 0.65 -0.6
329,168 + Psyr_0308 0.65 +0.3
329,169 - Psyr_0308 0.65 -0.8
329,169 - Psyr_0308 0.65 +0.3
329,221 + Psyr_0308 0.72 +0.1
329,222 - Psyr_0308 0.72 +0.7
329,255 + Psyr_0308 0.77 -1.6
329,308 + Psyr_0308 0.84 -1.1
329,308 + Psyr_0308 0.84 -1.0
329,308 + Psyr_0308 0.84 +0.4
329,309 - Psyr_0308 0.84 +0.1
329,309 - Psyr_0308 0.84 +0.2
329,309 - Psyr_0308 0.84 +0.0
329,329 + Psyr_0308 0.87 -1.5
329,329 + Psyr_0308 0.87 -1.1
329,330 - Psyr_0308 0.87 -0.3
329,333 + Psyr_0308 0.88 -0.9
329,333 + Psyr_0308 0.88 -0.4
329,333 + Psyr_0308 0.88 -0.6
329,333 + Psyr_0308 0.88 -0.8
329,333 + Psyr_0308 0.88 +0.4
329,333 + Psyr_0308 0.88 +1.0
329,334 - Psyr_0308 0.88 -0.2
329,334 - Psyr_0308 0.88 -0.1
329,334 - Psyr_0308 0.88 +0.2
329,334 - Psyr_0308 0.88 +0.5
329,334 - Psyr_0308 0.88 -0.1
329,361 - -1.0
329,380 + +0.6
329,392 + -1.6

Or see this region's nucleotide sequence