Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_861 and PfGW456L13_862 are separated by 60 nucleotides PfGW456L13_862 and PfGW456L13_863 are separated by 192 nucleotides PfGW456L13_863 and PfGW456L13_864 overlap by 4 nucleotides PfGW456L13_864 and PfGW456L13_865 are separated by 206 nucleotides
PfGW456L13_861 - Regulator of sigma D, at 967,684 to 968,142
_861
PfGW456L13_862 - Macrophage infectivity potentiator, at 968,203 to 968,868
_862
PfGW456L13_863 - Twin-arginine translocation protein TatB, at 969,061 to 970,206
_863
PfGW456L13_864 - hypothetical protein, at 970,203 to 970,511
_864
PfGW456L13_865 - Glutathione-regulated potassium-efflux system ATP-binding protein, at 970,718 to 972,628
_865
Position (kb) 969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 968.285 kb on + strand, within PfGW456L13_862 at 968.285 kb on + strand, within PfGW456L13_862 at 968.286 kb on - strand, within PfGW456L13_862 at 968.286 kb on - strand, within PfGW456L13_862 at 968.286 kb on - strand, within PfGW456L13_862 at 968.437 kb on - strand, within PfGW456L13_862 at 968.438 kb on + strand, within PfGW456L13_862 at 968.438 kb on + strand, within PfGW456L13_862 at 968.438 kb on + strand, within PfGW456L13_862 at 968.438 kb on + strand, within PfGW456L13_862 at 968.438 kb on + strand, within PfGW456L13_862 at 968.438 kb on + strand, within PfGW456L13_862 at 968.438 kb on + strand, within PfGW456L13_862 at 968.438 kb on + strand, within PfGW456L13_862 at 968.438 kb on + strand, within PfGW456L13_862 at 968.438 kb on + strand, within PfGW456L13_862 at 968.438 kb on + strand, within PfGW456L13_862 at 968.439 kb on - strand, within PfGW456L13_862 at 968.439 kb on - strand, within PfGW456L13_862 at 968.439 kb on - strand, within PfGW456L13_862 at 968.439 kb on - strand, within PfGW456L13_862 at 968.439 kb on - strand, within PfGW456L13_862 at 968.439 kb on - strand, within PfGW456L13_862 at 968.439 kb on - strand, within PfGW456L13_862 at 968.439 kb on - strand, within PfGW456L13_862 at 968.439 kb on - strand, within PfGW456L13_862 at 968.439 kb on - strand, within PfGW456L13_862 at 968.439 kb on - strand, within PfGW456L13_862 at 968.439 kb on - strand, within PfGW456L13_862 at 968.481 kb on + strand, within PfGW456L13_862 at 968.481 kb on + strand, within PfGW456L13_862 at 968.482 kb on - strand, within PfGW456L13_862 at 968.638 kb on + strand, within PfGW456L13_862 at 968.638 kb on + strand, within PfGW456L13_862 at 968.639 kb on - strand, within PfGW456L13_862 at 968.639 kb on - strand, within PfGW456L13_862 at 968.639 kb on - strand, within PfGW456L13_862 at 968.639 kb on - strand, within PfGW456L13_862 at 968.639 kb on - strand, within PfGW456L13_862 at 968.685 kb on - strand, within PfGW456L13_862 at 968.685 kb on - strand, within PfGW456L13_862 at 968.774 kb on + strand, within PfGW456L13_862 at 968.774 kb on + strand, within PfGW456L13_862 at 968.775 kb on - strand, within PfGW456L13_862 at 968.775 kb on - strand, within PfGW456L13_862 at 968.775 kb on - strand, within PfGW456L13_862 at 968.859 kb on - strand at 968.899 kb on + strand at 968.900 kb on - strand at 969.023 kb on + strand at 969.023 kb on + strand at 969.023 kb on + strand at 969.023 kb on + strand at 969.023 kb on + strand at 969.023 kb on + strand at 969.023 kb on + strand at 969.023 kb on + strand at 969.023 kb on + strand at 969.023 kb on + strand at 969.024 kb on - strand at 969.024 kb on - strand at 969.024 kb on - strand at 969.024 kb on - strand at 969.026 kb on + strand at 969.026 kb on + strand at 969.026 kb on + strand at 969.027 kb on - strand at 969.055 kb on + strand at 969.055 kb on + strand at 969.056 kb on - strand at 969.056 kb on - strand at 969.056 kb on - strand at 969.056 kb on - strand at 969.056 kb on - strand at 969.083 kb on + strand at 969.083 kb on + strand at 969.362 kb on - strand at 969.425 kb on + strand, within PfGW456L13_863 at 969.426 kb on - strand, within PfGW456L13_863 at 969.426 kb on - strand, within PfGW456L13_863 at 969.426 kb on - strand, within PfGW456L13_863 at 969.681 kb on + strand, within PfGW456L13_863 at 969.682 kb on - strand, within PfGW456L13_863 at 969.682 kb on - strand, within PfGW456L13_863 at 969.682 kb on - strand, within PfGW456L13_863 at 969.682 kb on - strand, within PfGW456L13_863 at 969.897 kb on - strand, within PfGW456L13_863 at 969.897 kb on - strand, within PfGW456L13_863 at 969.934 kb on - strand, within PfGW456L13_863 at 969.961 kb on - strand, within PfGW456L13_863 at 970.122 kb on - strand at 970.122 kb on - strand at 970.204 kb on + strand at 970.204 kb on + strand at 970.204 kb on + strand at 970.204 kb on + strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.293 kb on + strand, within PfGW456L13_864 at 970.293 kb on + strand, within PfGW456L13_864 at 970.293 kb on + strand, within PfGW456L13_864 at 970.293 kb on + strand, within PfGW456L13_864 at 970.294 kb on - strand, within PfGW456L13_864 at 970.344 kb on + strand, within PfGW456L13_864 at 970.344 kb on + strand, within PfGW456L13_864 at 970.345 kb on - strand, within PfGW456L13_864 at 970.345 kb on - strand, within PfGW456L13_864 at 970.496 kb on + strand at 970.523 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.634 kb on + strand at 970.634 kb on + strand at 970.634 kb on + strand at 970.634 kb on + strand at 970.634 kb on + strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.638 kb on + strand at 970.639 kb on - strand at 970.639 kb on - strand at 970.639 kb on - strand at 970.639 kb on - strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.674 kb on - strand at 970.701 kb on + strand at 970.718 kb on - strand at 970.718 kb on - strand at 970.718 kb on - strand at 970.743 kb on + strand at 970.744 kb on - strand at 970.767 kb on + strand at 970.768 kb on - strand at 970.964 kb on + strand, within PfGW456L13_865 at 970.964 kb on + strand, within PfGW456L13_865 at 970.964 kb on + strand, within PfGW456L13_865 at 970.964 kb on + strand, within PfGW456L13_865 at 970.965 kb on - strand, within PfGW456L13_865 at 970.965 kb on - strand, within PfGW456L13_865 at 971.085 kb on - strand, within PfGW456L13_865 at 971.085 kb on - strand, within PfGW456L13_865
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 968,285 + PfGW456L13_862 0.12 +2.2 968,285 + PfGW456L13_862 0.12 -1.0 968,286 - PfGW456L13_862 0.12 -1.6 968,286 - PfGW456L13_862 0.12 -0.3 968,286 - PfGW456L13_862 0.12 +0.1 968,437 - PfGW456L13_862 0.35 +0.6 968,438 + PfGW456L13_862 0.35 -3.1 968,438 + PfGW456L13_862 0.35 +2.4 968,438 + PfGW456L13_862 0.35 -1.4 968,438 + PfGW456L13_862 0.35 -0.5 968,438 + PfGW456L13_862 0.35 +0.7 968,438 + PfGW456L13_862 0.35 -2.1 968,438 + PfGW456L13_862 0.35 -2.8 968,438 + PfGW456L13_862 0.35 +2.3 968,438 + PfGW456L13_862 0.35 +1.2 968,438 + PfGW456L13_862 0.35 -1.9 968,438 + PfGW456L13_862 0.35 +1.4 968,439 - PfGW456L13_862 0.35 -1.3 968,439 - PfGW456L13_862 0.35 +1.6 968,439 - PfGW456L13_862 0.35 -2.0 968,439 - PfGW456L13_862 0.35 +1.4 968,439 - PfGW456L13_862 0.35 +1.0 968,439 - PfGW456L13_862 0.35 -0.0 968,439 - PfGW456L13_862 0.35 -0.8 968,439 - PfGW456L13_862 0.35 +0.2 968,439 - PfGW456L13_862 0.35 -1.4 968,439 - PfGW456L13_862 0.35 -1.3 968,439 - PfGW456L13_862 0.35 +1.3 968,439 - PfGW456L13_862 0.35 -0.1 968,481 + PfGW456L13_862 0.42 -0.4 968,481 + PfGW456L13_862 0.42 +2.7 968,482 - PfGW456L13_862 0.42 +1.4 968,638 + PfGW456L13_862 0.65 +0.5 968,638 + PfGW456L13_862 0.65 -1.0 968,639 - PfGW456L13_862 0.65 +0.1 968,639 - PfGW456L13_862 0.65 -2.2 968,639 - PfGW456L13_862 0.65 -2.2 968,639 - PfGW456L13_862 0.65 +1.5 968,639 - PfGW456L13_862 0.65 -1.0 968,685 - PfGW456L13_862 0.72 -0.5 968,685 - PfGW456L13_862 0.72 -1.0 968,774 + PfGW456L13_862 0.86 +0.4 968,774 + PfGW456L13_862 0.86 -1.1 968,775 - PfGW456L13_862 0.86 -1.0 968,775 - PfGW456L13_862 0.86 +0.6 968,775 - PfGW456L13_862 0.86 +0.8 968,859 - +1.0 968,899 + +0.8 968,900 - -0.4 969,023 + +0.0 969,023 + -0.5 969,023 + -1.5 969,023 + -0.1 969,023 + -0.8 969,023 + +0.4 969,023 + -0.6 969,023 + +0.9 969,023 + -1.2 969,023 + +1.8 969,024 - -2.7 969,024 - +0.5 969,024 - +0.8 969,024 - -1.0 969,026 + -2.6 969,026 + -2.0 969,026 + -0.6 969,027 - -0.4 969,055 + +0.4 969,055 + -0.9 969,056 - -0.5 969,056 - -1.8 969,056 - -2.7 969,056 - -0.7 969,056 - -0.3 969,083 + -1.4 969,083 + +0.3 969,362 - +0.7 969,425 + PfGW456L13_863 0.32 -2.3 969,426 - PfGW456L13_863 0.32 -2.5 969,426 - PfGW456L13_863 0.32 -1.1 969,426 - PfGW456L13_863 0.32 -0.7 969,681 + PfGW456L13_863 0.54 +0.1 969,682 - PfGW456L13_863 0.54 -1.0 969,682 - PfGW456L13_863 0.54 +0.1 969,682 - PfGW456L13_863 0.54 +1.9 969,682 - PfGW456L13_863 0.54 +0.5 969,897 - PfGW456L13_863 0.73 +0.1 969,897 - PfGW456L13_863 0.73 -0.7 969,934 - PfGW456L13_863 0.76 -0.6 969,961 - PfGW456L13_863 0.79 +0.9 970,122 - +0.4 970,122 - +0.6 970,204 + -0.3 970,204 + +1.4 970,204 + +1.7 970,204 + +0.3 970,205 - -2.0 970,205 - +1.1 970,205 - -2.7 970,205 - +0.4 970,205 - -1.5 970,205 - -3.3 970,205 - -0.1 970,205 - -1.0 970,205 - -1.9 970,293 + PfGW456L13_864 0.29 +0.9 970,293 + PfGW456L13_864 0.29 -2.9 970,293 + PfGW456L13_864 0.29 +0.3 970,293 + PfGW456L13_864 0.29 -2.3 970,294 - PfGW456L13_864 0.29 -0.6 970,344 + PfGW456L13_864 0.46 -2.4 970,344 + PfGW456L13_864 0.46 +1.1 970,345 - PfGW456L13_864 0.46 -2.5 970,345 - PfGW456L13_864 0.46 -1.5 970,496 + -2.1 970,523 + -0.3 970,630 + -0.1 970,630 + -2.1 970,630 + +0.7 970,630 + -1.6 970,630 + +2.3 970,630 + +1.2 970,630 + +1.4 970,630 + +1.3 970,630 + +0.4 970,630 + -0.7 970,631 - -0.5 970,631 - +1.4 970,631 - -2.1 970,631 - +0.9 970,631 - +1.0 970,631 - +0.7 970,631 - +1.4 970,631 - -1.8 970,631 - +0.3 970,631 - +0.4 970,634 + +2.1 970,634 + -0.4 970,634 + +1.4 970,634 + -2.2 970,634 + +1.4 970,635 - +0.8 970,635 - -0.1 970,635 - +2.3 970,635 - -0.1 970,635 - +1.7 970,635 - -1.3 970,635 - -3.2 970,635 - +2.4 970,635 - -1.3 970,635 - +0.5 970,635 - +1.6 970,635 - +0.4 970,635 - -2.0 970,638 + +1.9 970,639 - +0.1 970,639 - +1.0 970,639 - -0.4 970,639 - +1.4 970,667 + +0.0 970,667 + -0.7 970,667 + -2.0 970,667 + -2.9 970,667 + +1.7 970,667 + -0.3 970,667 + +0.4 970,667 + +0.5 970,667 + -2.4 970,668 - -0.1 970,668 - +1.4 970,668 - +0.3 970,668 - -2.7 970,668 - -1.9 970,668 - +0.2 970,668 - -0.9 970,668 - -2.6 970,668 - -0.9 970,668 - -2.5 970,668 - +0.1 970,668 - +0.7 970,668 - +1.9 970,668 - -1.9 970,668 - -2.1 970,668 - +0.2 970,668 - -1.8 970,668 - -2.4 970,668 - +1.0 970,668 - -0.2 970,668 - -0.1 970,674 - +1.2 970,701 + -1.7 970,718 - -0.8 970,718 - -0.3 970,718 - +1.6 970,743 + -0.1 970,744 - -3.5 970,767 + -0.1 970,768 - -1.1 970,964 + PfGW456L13_865 0.13 +1.5 970,964 + PfGW456L13_865 0.13 +0.2 970,964 + PfGW456L13_865 0.13 -2.2 970,964 + PfGW456L13_865 0.13 +2.5 970,965 - PfGW456L13_865 0.13 +0.9 970,965 - PfGW456L13_865 0.13 +1.1 971,085 - PfGW456L13_865 0.19 -3.3 971,085 - PfGW456L13_865 0.19 -0.5
Or see this region's nucleotide sequence