Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_59 and PfGW456L13_60 are separated by 65 nucleotides PfGW456L13_60 and PfGW456L13_61 are separated by 187 nucleotides PfGW456L13_61 and PfGW456L13_62 are separated by 78 nucleotides PfGW456L13_62 and PfGW456L13_63 are separated by 148 nucleotides
PfGW456L13_59 - Sensor histidine kinase/response regulator, at 69,484 to 72,234
_59
PfGW456L13_60 - membrane protein, MarC family, at 72,300 to 72,896
_60
PfGW456L13_61 - hypothetical protein, at 73,084 to 73,407
_61
PfGW456L13_62 - hypothetical protein, at 73,486 to 73,599
_62
PfGW456L13_63 - hypothetical protein, at 73,748 to 74,167
_63
Position (kb) 72
73 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.522 kb on - strand, within PfGW456L13_59 at 71.531 kb on + strand, within PfGW456L13_59 at 71.531 kb on + strand, within PfGW456L13_59 at 71.531 kb on + strand, within PfGW456L13_59 at 71.531 kb on + strand, within PfGW456L13_59 at 71.531 kb on + strand, within PfGW456L13_59 at 71.532 kb on - strand, within PfGW456L13_59 at 71.532 kb on - strand, within PfGW456L13_59 at 71.532 kb on - strand, within PfGW456L13_59 at 72.085 kb on - strand at 72.100 kb on - strand at 72.259 kb on + strand at 72.259 kb on + strand at 72.259 kb on + strand at 72.260 kb on - strand at 72.325 kb on - strand at 72.346 kb on - strand at 72.393 kb on + strand, within PfGW456L13_60 at 72.430 kb on + strand, within PfGW456L13_60 at 72.465 kb on + strand, within PfGW456L13_60 at 72.465 kb on + strand, within PfGW456L13_60 at 72.465 kb on + strand, within PfGW456L13_60 at 72.465 kb on + strand, within PfGW456L13_60 at 72.466 kb on - strand, within PfGW456L13_60 at 72.466 kb on - strand, within PfGW456L13_60 at 72.466 kb on - strand, within PfGW456L13_60 at 72.504 kb on - strand, within PfGW456L13_60 at 72.743 kb on + strand, within PfGW456L13_60 at 72.743 kb on + strand, within PfGW456L13_60 at 72.744 kb on - strand, within PfGW456L13_60 at 73.028 kb on - strand at 73.061 kb on + strand at 73.061 kb on + strand at 73.061 kb on + strand at 73.061 kb on + strand at 73.062 kb on - strand at 73.062 kb on - strand at 73.062 kb on - strand at 73.062 kb on - strand at 73.156 kb on + strand, within PfGW456L13_61 at 73.157 kb on - strand, within PfGW456L13_61 at 73.260 kb on - strand, within PfGW456L13_61 at 73.260 kb on - strand, within PfGW456L13_61 at 73.435 kb on + strand at 73.436 kb on - strand at 73.531 kb on + strand, within PfGW456L13_62 at 73.598 kb on - strand at 73.655 kb on - strand at 73.693 kb on - strand at 73.804 kb on - strand, within PfGW456L13_63
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 71,522 - PfGW456L13_59 0.74 -0.5 71,531 + PfGW456L13_59 0.74 -0.1 71,531 + PfGW456L13_59 0.74 -0.5 71,531 + PfGW456L13_59 0.74 -0.8 71,531 + PfGW456L13_59 0.74 -0.3 71,531 + PfGW456L13_59 0.74 +1.5 71,532 - PfGW456L13_59 0.74 +0.2 71,532 - PfGW456L13_59 0.74 -0.3 71,532 - PfGW456L13_59 0.74 +0.9 72,085 - -0.3 72,100 - -2.2 72,259 + +2.0 72,259 + -1.0 72,259 + +1.3 72,260 - -0.1 72,325 - +0.6 72,346 - +0.2 72,393 + PfGW456L13_60 0.16 -0.1 72,430 + PfGW456L13_60 0.22 -0.7 72,465 + PfGW456L13_60 0.28 +2.2 72,465 + PfGW456L13_60 0.28 +0.1 72,465 + PfGW456L13_60 0.28 +0.3 72,465 + PfGW456L13_60 0.28 +2.1 72,466 - PfGW456L13_60 0.28 +2.3 72,466 - PfGW456L13_60 0.28 +1.3 72,466 - PfGW456L13_60 0.28 +2.2 72,504 - PfGW456L13_60 0.34 +1.1 72,743 + PfGW456L13_60 0.74 +0.1 72,743 + PfGW456L13_60 0.74 -0.8 72,744 - PfGW456L13_60 0.74 -1.7 73,028 - -0.8 73,061 + +1.9 73,061 + +0.1 73,061 + -0.5 73,061 + +0.2 73,062 - -2.0 73,062 - +0.1 73,062 - -0.8 73,062 - -0.1 73,156 + PfGW456L13_61 0.22 +1.3 73,157 - PfGW456L13_61 0.23 +0.8 73,260 - PfGW456L13_61 0.54 +1.0 73,260 - PfGW456L13_61 0.54 -1.7 73,435 + +0.2 73,436 - -1.9 73,531 + PfGW456L13_62 0.39 -0.4 73,598 - +1.0 73,655 - +1.4 73,693 - +0.0 73,804 - PfGW456L13_63 0.13 -1.7
Or see this region's nucleotide sequence