Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_536

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_535 and PfGW456L13_536 are separated by 325 nucleotidesPfGW456L13_536 and PfGW456L13_537 overlap by 4 nucleotidesPfGW456L13_537 and PfGW456L13_538 overlap by 40 nucleotides PfGW456L13_535 - Type I secretion system, outer membrane component LapE, at 618,100 to 619,488 _535 PfGW456L13_536 - T1SS secreted agglutinin RTX, at 619,814 to 623,119 _536 PfGW456L13_537 - T1SS secreted agglutinin RTX, at 623,116 to 623,496 _537 PfGW456L13_538 - T1SS secreted agglutinin RTX, at 623,457 to 624,992 _538 Position (kb) 619 620 621 622 623 624Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 618.821 kb on + strand, within PfGW456L13_535at 618.821 kb on + strand, within PfGW456L13_535at 618.821 kb on + strand, within PfGW456L13_535at 618.821 kb on + strand, within PfGW456L13_535at 618.821 kb on + strand, within PfGW456L13_535at 618.821 kb on + strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.956 kb on + strand, within PfGW456L13_535at 618.956 kb on + strand, within PfGW456L13_535at 618.956 kb on + strand, within PfGW456L13_535at 618.957 kb on - strand, within PfGW456L13_535at 618.997 kb on + strand, within PfGW456L13_535at 618.998 kb on - strand, within PfGW456L13_535at 618.998 kb on - strand, within PfGW456L13_535at 619.028 kb on + strand, within PfGW456L13_535at 619.066 kb on - strand, within PfGW456L13_535at 619.066 kb on - strand, within PfGW456L13_535at 619.163 kb on - strand, within PfGW456L13_535at 619.163 kb on - strand, within PfGW456L13_535at 619.280 kb on + strand, within PfGW456L13_535at 619.280 kb on + strand, within PfGW456L13_535at 619.280 kb on + strand, within PfGW456L13_535at 619.280 kb on + strand, within PfGW456L13_535at 619.280 kb on + strand, within PfGW456L13_535at 619.281 kb on - strand, within PfGW456L13_535at 619.281 kb on - strand, within PfGW456L13_535at 619.281 kb on - strand, within PfGW456L13_535at 619.307 kb on + strand, within PfGW456L13_535at 619.384 kb on + strandat 619.426 kb on + strandat 619.426 kb on + strandat 619.426 kb on + strandat 619.427 kb on - strandat 619.427 kb on - strandat 619.427 kb on - strandat 619.427 kb on - strandat 619.427 kb on - strandat 619.455 kb on + strandat 619.534 kb on + strandat 619.534 kb on + strandat 619.535 kb on - strandat 619.535 kb on - strandat 619.535 kb on - strandat 619.535 kb on - strandat 619.535 kb on - strandat 619.570 kb on + strandat 619.570 kb on + strandat 619.570 kb on + strandat 619.570 kb on + strandat 619.571 kb on - strandat 619.626 kb on - strandat 619.722 kb on + strandat 619.722 kb on + strandat 619.723 kb on - strandat 619.723 kb on - strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.735 kb on - strandat 619.735 kb on - strandat 619.735 kb on - strandat 619.735 kb on - strandat 619.735 kb on - strandat 619.735 kb on - strandat 619.735 kb on - strandat 619.735 kb on - strandat 620.073 kb on + strandat 620.073 kb on + strandat 620.074 kb on - strandat 620.323 kb on + strand, within PfGW456L13_536at 620.324 kb on - strand, within PfGW456L13_536at 620.324 kb on - strand, within PfGW456L13_536at 620.324 kb on - strand, within PfGW456L13_536at 620.324 kb on - strand, within PfGW456L13_536at 620.324 kb on - strand, within PfGW456L13_536at 620.324 kb on - strand, within PfGW456L13_536at 620.335 kb on + strand, within PfGW456L13_536at 620.405 kb on + strand, within PfGW456L13_536at 620.406 kb on - strand, within PfGW456L13_536at 620.406 kb on - strand, within PfGW456L13_536at 620.406 kb on - strand, within PfGW456L13_536at 620.406 kb on - strand, within PfGW456L13_536at 620.537 kb on + strand, within PfGW456L13_536at 620.537 kb on + strand, within PfGW456L13_536at 620.537 kb on + strand, within PfGW456L13_536at 620.537 kb on + strand, within PfGW456L13_536at 620.538 kb on - strand, within PfGW456L13_536at 620.538 kb on - strand, within PfGW456L13_536at 620.538 kb on - strand, within PfGW456L13_536at 620.538 kb on - strand, within PfGW456L13_536at 620.538 kb on - strand, within PfGW456L13_536at 620.538 kb on - strand, within PfGW456L13_536at 620.538 kb on - strand, within PfGW456L13_536at 620.562 kb on + strand, within PfGW456L13_536at 620.562 kb on + strand, within PfGW456L13_536at 620.562 kb on + strand, within PfGW456L13_536at 620.563 kb on - strand, within PfGW456L13_536at 620.563 kb on - strand, within PfGW456L13_536at 620.563 kb on - strand, within PfGW456L13_536at 620.563 kb on - strand, within PfGW456L13_536at 620.563 kb on - strand, within PfGW456L13_536at 620.563 kb on - strand, within PfGW456L13_536at 620.563 kb on - strand, within PfGW456L13_536at 620.563 kb on - strand, within PfGW456L13_536at 620.563 kb on - strand, within PfGW456L13_536at 620.642 kb on - strand, within PfGW456L13_536at 620.708 kb on + strand, within PfGW456L13_536at 620.708 kb on + strand, within PfGW456L13_536at 620.709 kb on - strand, within PfGW456L13_536at 620.709 kb on - strand, within PfGW456L13_536at 620.709 kb on - strand, within PfGW456L13_536at 620.709 kb on - strand, within PfGW456L13_536at 620.746 kb on - strand, within PfGW456L13_536at 620.901 kb on + strand, within PfGW456L13_536at 620.901 kb on + strand, within PfGW456L13_536at 620.901 kb on + strand, within PfGW456L13_536at 620.901 kb on + strand, within PfGW456L13_536at 620.901 kb on + strand, within PfGW456L13_536at 620.902 kb on - strand, within PfGW456L13_536at 621.008 kb on + strand, within PfGW456L13_536at 621.008 kb on + strand, within PfGW456L13_536at 621.008 kb on + strand, within PfGW456L13_536at 621.008 kb on + strand, within PfGW456L13_536at 621.008 kb on + strand, within PfGW456L13_536at 621.008 kb on + strand, within PfGW456L13_536at 621.038 kb on - strand, within PfGW456L13_536at 621.077 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.138 kb on - strand, within PfGW456L13_536at 621.308 kb on + strand, within PfGW456L13_536at 621.376 kb on + strand, within PfGW456L13_536at 621.376 kb on + strand, within PfGW456L13_536at 621.376 kb on + strand, within PfGW456L13_536at 621.377 kb on - strand, within PfGW456L13_536at 621.438 kb on - strand, within PfGW456L13_536at 621.438 kb on - strand, within PfGW456L13_536at 621.438 kb on - strand, within PfGW456L13_536at 621.438 kb on - strand, within PfGW456L13_536at 621.438 kb on - strand, within PfGW456L13_536at 621.438 kb on - strand, within PfGW456L13_536at 621.438 kb on - strand, within PfGW456L13_536at 621.438 kb on - strand, within PfGW456L13_536at 621.438 kb on - strand, within PfGW456L13_536at 621.676 kb on + strand, within PfGW456L13_536at 621.676 kb on + strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.738 kb on - strand, within PfGW456L13_536at 621.740 kb on - strand, within PfGW456L13_536at 622.038 kb on - strand, within PfGW456L13_536at 622.038 kb on - strand, within PfGW456L13_536at 622.038 kb on - strand, within PfGW456L13_536at 622.038 kb on - strand, within PfGW456L13_536at 622.038 kb on - strand, within PfGW456L13_536at 622.181 kb on - strand, within PfGW456L13_536at 622.181 kb on - strand, within PfGW456L13_536

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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618,821 + PfGW456L13_535 0.52 +0.7
618,821 + PfGW456L13_535 0.52 -0.9
618,821 + PfGW456L13_535 0.52 -1.8
618,821 + PfGW456L13_535 0.52 -1.4
618,821 + PfGW456L13_535 0.52 -0.7
618,821 + PfGW456L13_535 0.52 +1.1
618,822 - PfGW456L13_535 0.52 +2.1
618,822 - PfGW456L13_535 0.52 -0.5
618,822 - PfGW456L13_535 0.52 +1.6
618,822 - PfGW456L13_535 0.52 -0.6
618,822 - PfGW456L13_535 0.52 -0.2
618,822 - PfGW456L13_535 0.52 -0.5
618,822 - PfGW456L13_535 0.52 -0.2
618,956 + PfGW456L13_535 0.62 -1.7
618,956 + PfGW456L13_535 0.62 +0.4
618,956 + PfGW456L13_535 0.62 +0.4
618,957 - PfGW456L13_535 0.62 +0.4
618,997 + PfGW456L13_535 0.65 -0.1
618,998 - PfGW456L13_535 0.65 +0.7
618,998 - PfGW456L13_535 0.65 +0.3
619,028 + PfGW456L13_535 0.67 -0.1
619,066 - PfGW456L13_535 0.70 +0.2
619,066 - PfGW456L13_535 0.70 +0.7
619,163 - PfGW456L13_535 0.77 +2.1
619,163 - PfGW456L13_535 0.77 +0.4
619,280 + PfGW456L13_535 0.85 +0.7
619,280 + PfGW456L13_535 0.85 -2.4
619,280 + PfGW456L13_535 0.85 +2.2
619,280 + PfGW456L13_535 0.85 -1.5
619,280 + PfGW456L13_535 0.85 +1.4
619,281 - PfGW456L13_535 0.85 +1.7
619,281 - PfGW456L13_535 0.85 -1.1
619,281 - PfGW456L13_535 0.85 +0.3
619,307 + PfGW456L13_535 0.87 -0.4
619,384 + +1.0
619,426 + +0.8
619,426 + -1.5
619,426 + -2.4
619,427 - +1.4
619,427 - +0.8
619,427 - -0.5
619,427 - -0.0
619,427 - +0.1
619,455 + +0.8
619,534 + +0.5
619,534 + +1.0
619,535 - -1.1
619,535 - -3.0
619,535 - -1.1
619,535 - -2.6
619,535 - -0.8
619,570 + -0.2
619,570 + -1.9
619,570 + -3.0
619,570 + -0.4
619,571 - -1.9
619,626 - +1.3
619,722 + -2.2
619,722 + -1.7
619,723 - +0.8
619,723 - -0.3
619,734 + +0.5
619,734 + +0.6
619,734 + +1.3
619,734 + -1.9
619,734 + +0.8
619,734 + +0.5
619,734 + -1.1
619,734 + -2.2
619,734 + -1.2
619,734 + -1.6
619,734 + +1.1
619,735 - +1.1
619,735 - -1.2
619,735 - +2.7
619,735 - -0.4
619,735 - +0.4
619,735 - +0.7
619,735 - -0.3
619,735 - +1.8
620,073 + -0.9
620,073 + +0.5
620,074 - +1.0
620,323 + PfGW456L13_536 0.15 +2.0
620,324 - PfGW456L13_536 0.15 -1.6
620,324 - PfGW456L13_536 0.15 +0.6
620,324 - PfGW456L13_536 0.15 +1.4
620,324 - PfGW456L13_536 0.15 +1.1
620,324 - PfGW456L13_536 0.15 -3.0
620,324 - PfGW456L13_536 0.15 +0.8
620,335 + PfGW456L13_536 0.16 -2.7
620,405 + PfGW456L13_536 0.18 +0.0
620,406 - PfGW456L13_536 0.18 -0.3
620,406 - PfGW456L13_536 0.18 -0.3
620,406 - PfGW456L13_536 0.18 +1.0
620,406 - PfGW456L13_536 0.18 +1.1
620,537 + PfGW456L13_536 0.22 -0.8
620,537 + PfGW456L13_536 0.22 +1.6
620,537 + PfGW456L13_536 0.22 -0.6
620,537 + PfGW456L13_536 0.22 -1.2
620,538 - PfGW456L13_536 0.22 +0.9
620,538 - PfGW456L13_536 0.22 -1.9
620,538 - PfGW456L13_536 0.22 +0.2
620,538 - PfGW456L13_536 0.22 -0.2
620,538 - PfGW456L13_536 0.22 -1.2
620,538 - PfGW456L13_536 0.22 -1.8
620,538 - PfGW456L13_536 0.22 +0.3
620,562 + PfGW456L13_536 0.23 -0.4
620,562 + PfGW456L13_536 0.23 -0.2
620,562 + PfGW456L13_536 0.23 +0.1
620,563 - PfGW456L13_536 0.23 -0.6
620,563 - PfGW456L13_536 0.23 +3.0
620,563 - PfGW456L13_536 0.23 +1.5
620,563 - PfGW456L13_536 0.23 -0.7
620,563 - PfGW456L13_536 0.23 +1.6
620,563 - PfGW456L13_536 0.23 +1.4
620,563 - PfGW456L13_536 0.23 +1.4
620,563 - PfGW456L13_536 0.23 +0.3
620,563 - PfGW456L13_536 0.23 +1.2
620,642 - PfGW456L13_536 0.25 +0.9
620,708 + PfGW456L13_536 0.27 +1.7
620,708 + PfGW456L13_536 0.27 +1.7
620,709 - PfGW456L13_536 0.27 +0.5
620,709 - PfGW456L13_536 0.27 -1.7
620,709 - PfGW456L13_536 0.27 +0.2
620,709 - PfGW456L13_536 0.27 -1.6
620,746 - PfGW456L13_536 0.28 -0.1
620,901 + PfGW456L13_536 0.33 -3.9
620,901 + PfGW456L13_536 0.33 -1.2
620,901 + PfGW456L13_536 0.33 +1.3
620,901 + PfGW456L13_536 0.33 +0.3
620,901 + PfGW456L13_536 0.33 +0.2
620,902 - PfGW456L13_536 0.33 -0.0
621,008 + PfGW456L13_536 0.36 -1.1
621,008 + PfGW456L13_536 0.36 +1.0
621,008 + PfGW456L13_536 0.36 -0.1
621,008 + PfGW456L13_536 0.36 -0.5
621,008 + PfGW456L13_536 0.36 -1.0
621,008 + PfGW456L13_536 0.36 -1.4
621,038 - PfGW456L13_536 0.37 -1.9
621,077 - PfGW456L13_536 0.38 +1.3
621,138 - PfGW456L13_536 0.40 +0.4
621,138 - PfGW456L13_536 0.40 -1.0
621,138 - PfGW456L13_536 0.40 -2.2
621,138 - PfGW456L13_536 0.40 +1.2
621,138 - PfGW456L13_536 0.40 -1.6
621,138 - PfGW456L13_536 0.40 -2.4
621,138 - PfGW456L13_536 0.40 +1.4
621,138 - PfGW456L13_536 0.40 +0.4
621,138 - PfGW456L13_536 0.40 +0.7
621,138 - PfGW456L13_536 0.40 -0.4
621,138 - PfGW456L13_536 0.40 -3.4
621,138 - PfGW456L13_536 0.40 +0.9
621,138 - PfGW456L13_536 0.40 +1.1
621,138 - PfGW456L13_536 0.40 +2.0
621,138 - PfGW456L13_536 0.40 -1.4
621,308 + PfGW456L13_536 0.45 +0.8
621,376 + PfGW456L13_536 0.47 -1.6
621,376 + PfGW456L13_536 0.47 +1.3
621,376 + PfGW456L13_536 0.47 -0.8
621,377 - PfGW456L13_536 0.47 -0.0
621,438 - PfGW456L13_536 0.49 +3.0
621,438 - PfGW456L13_536 0.49 -0.8
621,438 - PfGW456L13_536 0.49 +1.6
621,438 - PfGW456L13_536 0.49 +0.2
621,438 - PfGW456L13_536 0.49 +1.8
621,438 - PfGW456L13_536 0.49 -2.9
621,438 - PfGW456L13_536 0.49 -2.9
621,438 - PfGW456L13_536 0.49 -1.8
621,438 - PfGW456L13_536 0.49 -1.5
621,676 + PfGW456L13_536 0.56 -0.1
621,676 + PfGW456L13_536 0.56 +0.7
621,738 - PfGW456L13_536 0.58 +2.5
621,738 - PfGW456L13_536 0.58 +1.1
621,738 - PfGW456L13_536 0.58 +0.9
621,738 - PfGW456L13_536 0.58 -1.2
621,738 - PfGW456L13_536 0.58 -2.3
621,738 - PfGW456L13_536 0.58 -0.0
621,738 - PfGW456L13_536 0.58 -0.4
621,738 - PfGW456L13_536 0.58 -0.2
621,738 - PfGW456L13_536 0.58 -0.9
621,738 - PfGW456L13_536 0.58 +0.8
621,738 - PfGW456L13_536 0.58 -0.6
621,738 - PfGW456L13_536 0.58 -2.1
621,738 - PfGW456L13_536 0.58 +0.7
621,740 - PfGW456L13_536 0.58 +1.1
622,038 - PfGW456L13_536 0.67 +1.5
622,038 - PfGW456L13_536 0.67 +0.5
622,038 - PfGW456L13_536 0.67 -1.3
622,038 - PfGW456L13_536 0.67 +0.4
622,038 - PfGW456L13_536 0.67 -0.4
622,181 - PfGW456L13_536 0.72 -1.9
622,181 - PfGW456L13_536 0.72 -1.8

Or see this region's nucleotide sequence