Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3658

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3657 and PfGW456L13_3658 overlap by 4 nucleotidesPfGW456L13_3658 and PfGW456L13_3659 are separated by 208 nucleotidesPfGW456L13_3659 and PfGW456L13_3660 are separated by 216 nucleotides PfGW456L13_3657 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 4,117,081 to 4,118,100 _3657 PfGW456L13_3658 - 3-oxosteroid 1-dehydrogenase (EC 1.3.99.4), at 4,118,097 to 4,119,836 _3658 PfGW456L13_3659 - hypothetical protein, at 4,120,045 to 4,120,617 _3659 PfGW456L13_3660 - Isochorismate pyruvate-lyase (EC 4.-.-.-), at 4,120,834 to 4,121,160 _3660 Position (kb) 4118 4119 4120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4117.133 kb on + strandat 4117.133 kb on + strandat 4117.134 kb on - strandat 4117.134 kb on - strandat 4117.134 kb on - strandat 4117.757 kb on - strand, within PfGW456L13_3657at 4117.757 kb on - strand, within PfGW456L13_3657at 4117.757 kb on - strand, within PfGW456L13_3657at 4117.915 kb on + strand, within PfGW456L13_3657at 4117.915 kb on + strand, within PfGW456L13_3657at 4117.958 kb on + strand, within PfGW456L13_3657at 4117.958 kb on + strand, within PfGW456L13_3657at 4117.958 kb on + strand, within PfGW456L13_3657at 4117.958 kb on + strand, within PfGW456L13_3657at 4117.958 kb on + strand, within PfGW456L13_3657at 4117.958 kb on + strand, within PfGW456L13_3657at 4117.959 kb on - strand, within PfGW456L13_3657at 4117.959 kb on - strand, within PfGW456L13_3657at 4117.959 kb on - strand, within PfGW456L13_3657at 4118.032 kb on + strandat 4118.077 kb on + strandat 4118.077 kb on + strandat 4118.078 kb on - strandat 4118.246 kb on - strandat 4118.319 kb on - strand, within PfGW456L13_3658at 4118.350 kb on + strand, within PfGW456L13_3658at 4118.350 kb on + strand, within PfGW456L13_3658at 4118.350 kb on + strand, within PfGW456L13_3658at 4118.351 kb on - strand, within PfGW456L13_3658at 4118.351 kb on - strand, within PfGW456L13_3658at 4118.351 kb on - strand, within PfGW456L13_3658at 4118.351 kb on - strand, within PfGW456L13_3658at 4118.411 kb on - strand, within PfGW456L13_3658at 4118.411 kb on - strand, within PfGW456L13_3658at 4118.414 kb on - strand, within PfGW456L13_3658at 4118.414 kb on - strand, within PfGW456L13_3658at 4118.414 kb on - strand, within PfGW456L13_3658at 4118.557 kb on + strand, within PfGW456L13_3658at 4118.558 kb on - strand, within PfGW456L13_3658at 4118.707 kb on + strand, within PfGW456L13_3658at 4118.707 kb on + strand, within PfGW456L13_3658at 4118.708 kb on - strand, within PfGW456L13_3658at 4118.708 kb on - strand, within PfGW456L13_3658at 4118.708 kb on - strand, within PfGW456L13_3658at 4118.708 kb on - strand, within PfGW456L13_3658at 4118.708 kb on - strand, within PfGW456L13_3658at 4118.708 kb on - strand, within PfGW456L13_3658at 4118.708 kb on - strand, within PfGW456L13_3658at 4118.708 kb on - strand, within PfGW456L13_3658at 4118.716 kb on + strand, within PfGW456L13_3658at 4118.716 kb on + strand, within PfGW456L13_3658at 4118.716 kb on + strand, within PfGW456L13_3658at 4118.716 kb on + strand, within PfGW456L13_3658at 4118.716 kb on + strand, within PfGW456L13_3658at 4118.716 kb on + strand, within PfGW456L13_3658at 4118.717 kb on - strand, within PfGW456L13_3658at 4118.717 kb on - strand, within PfGW456L13_3658at 4118.717 kb on - strand, within PfGW456L13_3658at 4118.717 kb on - strand, within PfGW456L13_3658at 4118.717 kb on - strand, within PfGW456L13_3658at 4118.717 kb on - strand, within PfGW456L13_3658at 4118.717 kb on - strand, within PfGW456L13_3658at 4118.717 kb on - strand, within PfGW456L13_3658at 4118.732 kb on - strand, within PfGW456L13_3658at 4118.732 kb on - strand, within PfGW456L13_3658at 4118.971 kb on + strand, within PfGW456L13_3658at 4118.971 kb on + strand, within PfGW456L13_3658at 4118.971 kb on + strand, within PfGW456L13_3658at 4118.971 kb on + strand, within PfGW456L13_3658at 4118.972 kb on - strand, within PfGW456L13_3658at 4118.972 kb on - strand, within PfGW456L13_3658at 4118.972 kb on - strand, within PfGW456L13_3658at 4119.171 kb on + strand, within PfGW456L13_3658at 4119.182 kb on + strand, within PfGW456L13_3658at 4119.187 kb on - strand, within PfGW456L13_3658at 4119.187 kb on - strand, within PfGW456L13_3658at 4119.242 kb on - strand, within PfGW456L13_3658at 4119.326 kb on + strand, within PfGW456L13_3658at 4119.326 kb on + strand, within PfGW456L13_3658at 4119.455 kb on - strand, within PfGW456L13_3658at 4119.457 kb on + strand, within PfGW456L13_3658at 4119.458 kb on - strand, within PfGW456L13_3658at 4119.511 kb on + strand, within PfGW456L13_3658at 4119.511 kb on + strand, within PfGW456L13_3658at 4119.511 kb on + strandat 4119.512 kb on - strand, within PfGW456L13_3658at 4119.512 kb on - strand, within PfGW456L13_3658at 4119.541 kb on + strand, within PfGW456L13_3658at 4119.542 kb on - strand, within PfGW456L13_3658at 4119.592 kb on + strand, within PfGW456L13_3658at 4119.593 kb on - strand, within PfGW456L13_3658at 4119.593 kb on - strand, within PfGW456L13_3658at 4119.593 kb on - strand, within PfGW456L13_3658at 4119.593 kb on - strand, within PfGW456L13_3658at 4119.593 kb on - strand, within PfGW456L13_3658at 4119.593 kb on - strand, within PfGW456L13_3658at 4119.648 kb on - strand, within PfGW456L13_3658at 4119.694 kb on + strandat 4119.695 kb on - strandat 4119.695 kb on - strandat 4119.695 kb on - strandat 4119.852 kb on + strandat 4119.853 kb on - strandat 4119.867 kb on - strandat 4120.022 kb on + strandat 4120.022 kb on + strandat 4120.022 kb on + strandat 4120.022 kb on + strandat 4120.023 kb on - strandat 4120.023 kb on - strandat 4120.023 kb on - strandat 4120.023 kb on - strandat 4120.175 kb on - strand, within PfGW456L13_3659at 4120.291 kb on + strand, within PfGW456L13_3659at 4120.291 kb on + strand, within PfGW456L13_3659at 4120.292 kb on - strand, within PfGW456L13_3659at 4120.292 kb on - strand, within PfGW456L13_3659at 4120.298 kb on + strand, within PfGW456L13_3659at 4120.299 kb on - strand, within PfGW456L13_3659at 4120.319 kb on + strand, within PfGW456L13_3659at 4120.320 kb on - strand, within PfGW456L13_3659at 4120.324 kb on + strand, within PfGW456L13_3659at 4120.325 kb on - strand, within PfGW456L13_3659at 4120.325 kb on - strand, within PfGW456L13_3659at 4120.360 kb on + strand, within PfGW456L13_3659at 4120.360 kb on + strand, within PfGW456L13_3659at 4120.361 kb on - strand, within PfGW456L13_3659at 4120.361 kb on - strand, within PfGW456L13_3659at 4120.361 kb on - strand, within PfGW456L13_3659at 4120.361 kb on - strand, within PfGW456L13_3659at 4120.361 kb on - strand, within PfGW456L13_3659at 4120.396 kb on + strand, within PfGW456L13_3659at 4120.396 kb on + strand, within PfGW456L13_3659at 4120.396 kb on + strand, within PfGW456L13_3659at 4120.396 kb on + strand, within PfGW456L13_3659at 4120.396 kb on + strand, within PfGW456L13_3659at 4120.396 kb on + strand, within PfGW456L13_3659at 4120.396 kb on + strand, within PfGW456L13_3659at 4120.397 kb on - strand, within PfGW456L13_3659at 4120.397 kb on - strand, within PfGW456L13_3659at 4120.397 kb on - strand, within PfGW456L13_3659at 4120.397 kb on - strand, within PfGW456L13_3659at 4120.397 kb on - strand, within PfGW456L13_3659at 4120.397 kb on - strand, within PfGW456L13_3659at 4120.397 kb on - strand, within PfGW456L13_3659at 4120.397 kb on - strand, within PfGW456L13_3659at 4120.456 kb on + strand, within PfGW456L13_3659at 4120.457 kb on - strand, within PfGW456L13_3659at 4120.457 kb on - strand, within PfGW456L13_3659at 4120.531 kb on + strand, within PfGW456L13_3659at 4120.531 kb on + strand, within PfGW456L13_3659at 4120.615 kb on + strandat 4120.616 kb on - strandat 4120.623 kb on + strandat 4120.623 kb on + strandat 4120.693 kb on + strandat 4120.693 kb on + strandat 4120.694 kb on - strandat 4120.694 kb on - strandat 4120.694 kb on - strandat 4120.694 kb on - strandat 4120.694 kb on - strandat 4120.753 kb on - strandat 4120.788 kb on - strandat 4120.788 kb on - strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.831 kb on + strandat 4120.832 kb on - strandat 4120.832 kb on - strandat 4120.832 kb on - strandat 4120.832 kb on - strandat 4120.832 kb on - strandat 4120.832 kb on - strandat 4120.832 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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4,117,133 + +0.0
4,117,133 + -1.3
4,117,134 - -0.8
4,117,134 - +0.3
4,117,134 - -0.6
4,117,757 - PfGW456L13_3657 0.66 -2.7
4,117,757 - PfGW456L13_3657 0.66 -0.3
4,117,757 - PfGW456L13_3657 0.66 +1.9
4,117,915 + PfGW456L13_3657 0.82 -0.8
4,117,915 + PfGW456L13_3657 0.82 -1.8
4,117,958 + PfGW456L13_3657 0.86 -0.9
4,117,958 + PfGW456L13_3657 0.86 +0.3
4,117,958 + PfGW456L13_3657 0.86 +1.2
4,117,958 + PfGW456L13_3657 0.86 -0.3
4,117,958 + PfGW456L13_3657 0.86 -2.0
4,117,958 + PfGW456L13_3657 0.86 -0.8
4,117,959 - PfGW456L13_3657 0.86 -0.8
4,117,959 - PfGW456L13_3657 0.86 +0.1
4,117,959 - PfGW456L13_3657 0.86 -1.0
4,118,032 + -1.1
4,118,077 + +1.1
4,118,077 + +0.9
4,118,078 - -0.5
4,118,246 - -2.5
4,118,319 - PfGW456L13_3658 0.13 -1.1
4,118,350 + PfGW456L13_3658 0.15 -1.6
4,118,350 + PfGW456L13_3658 0.15 -0.1
4,118,350 + PfGW456L13_3658 0.15 -0.2
4,118,351 - PfGW456L13_3658 0.15 +0.2
4,118,351 - PfGW456L13_3658 0.15 +2.2
4,118,351 - PfGW456L13_3658 0.15 -3.1
4,118,351 - PfGW456L13_3658 0.15 -0.1
4,118,411 - PfGW456L13_3658 0.18 -2.4
4,118,411 - PfGW456L13_3658 0.18 +0.8
4,118,414 - PfGW456L13_3658 0.18 +2.0
4,118,414 - PfGW456L13_3658 0.18 +0.9
4,118,414 - PfGW456L13_3658 0.18 +0.3
4,118,557 + PfGW456L13_3658 0.26 +0.3
4,118,558 - PfGW456L13_3658 0.26 +1.4
4,118,707 + PfGW456L13_3658 0.35 +0.2
4,118,707 + PfGW456L13_3658 0.35 +2.7
4,118,708 - PfGW456L13_3658 0.35 -1.7
4,118,708 - PfGW456L13_3658 0.35 -1.4
4,118,708 - PfGW456L13_3658 0.35 -0.7
4,118,708 - PfGW456L13_3658 0.35 -2.1
4,118,708 - PfGW456L13_3658 0.35 -2.1
4,118,708 - PfGW456L13_3658 0.35 -0.6
4,118,708 - PfGW456L13_3658 0.35 +1.6
4,118,708 - PfGW456L13_3658 0.35 -1.0
4,118,716 + PfGW456L13_3658 0.36 -0.2
4,118,716 + PfGW456L13_3658 0.36 +0.2
4,118,716 + PfGW456L13_3658 0.36 -0.9
4,118,716 + PfGW456L13_3658 0.36 -2.0
4,118,716 + PfGW456L13_3658 0.36 +1.0
4,118,716 + PfGW456L13_3658 0.36 -1.3
4,118,717 - PfGW456L13_3658 0.36 -1.4
4,118,717 - PfGW456L13_3658 0.36 -0.8
4,118,717 - PfGW456L13_3658 0.36 +0.7
4,118,717 - PfGW456L13_3658 0.36 +1.9
4,118,717 - PfGW456L13_3658 0.36 +2.0
4,118,717 - PfGW456L13_3658 0.36 -1.1
4,118,717 - PfGW456L13_3658 0.36 +0.8
4,118,717 - PfGW456L13_3658 0.36 +0.7
4,118,732 - PfGW456L13_3658 0.36 +1.2
4,118,732 - PfGW456L13_3658 0.36 +1.1
4,118,971 + PfGW456L13_3658 0.50 +0.8
4,118,971 + PfGW456L13_3658 0.50 +0.0
4,118,971 + PfGW456L13_3658 0.50 +0.3
4,118,971 + PfGW456L13_3658 0.50 +0.8
4,118,972 - PfGW456L13_3658 0.50 -0.9
4,118,972 - PfGW456L13_3658 0.50 -2.9
4,118,972 - PfGW456L13_3658 0.50 -1.6
4,119,171 + PfGW456L13_3658 0.62 -1.0
4,119,182 + PfGW456L13_3658 0.62 -2.4
4,119,187 - PfGW456L13_3658 0.63 +0.9
4,119,187 - PfGW456L13_3658 0.63 +0.4
4,119,242 - PfGW456L13_3658 0.66 -1.6
4,119,326 + PfGW456L13_3658 0.71 +0.0
4,119,326 + PfGW456L13_3658 0.71 +1.0
4,119,455 - PfGW456L13_3658 0.78 +1.1
4,119,457 + PfGW456L13_3658 0.78 -0.6
4,119,458 - PfGW456L13_3658 0.78 -0.8
4,119,511 + PfGW456L13_3658 0.81 -2.1
4,119,511 + PfGW456L13_3658 0.81 +0.1
4,119,511 + +1.0
4,119,512 - PfGW456L13_3658 0.81 +1.6
4,119,512 - PfGW456L13_3658 0.81 -1.9
4,119,541 + PfGW456L13_3658 0.83 -2.8
4,119,542 - PfGW456L13_3658 0.83 +0.3
4,119,592 + PfGW456L13_3658 0.86 +0.4
4,119,593 - PfGW456L13_3658 0.86 -1.1
4,119,593 - PfGW456L13_3658 0.86 -1.3
4,119,593 - PfGW456L13_3658 0.86 +0.6
4,119,593 - PfGW456L13_3658 0.86 +1.6
4,119,593 - PfGW456L13_3658 0.86 -0.5
4,119,593 - PfGW456L13_3658 0.86 -0.6
4,119,648 - PfGW456L13_3658 0.89 +0.5
4,119,694 + +1.3
4,119,695 - -1.7
4,119,695 - -2.1
4,119,695 - -1.4
4,119,852 + -2.9
4,119,853 - -0.3
4,119,867 - +1.0
4,120,022 + -0.9
4,120,022 + -0.7
4,120,022 + -1.6
4,120,022 + +2.2
4,120,023 - -0.0
4,120,023 - +0.8
4,120,023 - -0.2
4,120,023 - -1.9
4,120,175 - PfGW456L13_3659 0.23 -2.0
4,120,291 + PfGW456L13_3659 0.43 +0.0
4,120,291 + PfGW456L13_3659 0.43 +1.9
4,120,292 - PfGW456L13_3659 0.43 +0.6
4,120,292 - PfGW456L13_3659 0.43 -1.1
4,120,298 + PfGW456L13_3659 0.44 -1.0
4,120,299 - PfGW456L13_3659 0.44 +0.5
4,120,319 + PfGW456L13_3659 0.48 -0.5
4,120,320 - PfGW456L13_3659 0.48 +1.3
4,120,324 + PfGW456L13_3659 0.49 -0.7
4,120,325 - PfGW456L13_3659 0.49 -2.0
4,120,325 - PfGW456L13_3659 0.49 -0.8
4,120,360 + PfGW456L13_3659 0.55 -0.3
4,120,360 + PfGW456L13_3659 0.55 -0.4
4,120,361 - PfGW456L13_3659 0.55 -0.2
4,120,361 - PfGW456L13_3659 0.55 +0.1
4,120,361 - PfGW456L13_3659 0.55 -2.6
4,120,361 - PfGW456L13_3659 0.55 -2.9
4,120,361 - PfGW456L13_3659 0.55 +1.0
4,120,396 + PfGW456L13_3659 0.61 -2.0
4,120,396 + PfGW456L13_3659 0.61 -0.6
4,120,396 + PfGW456L13_3659 0.61 +2.1
4,120,396 + PfGW456L13_3659 0.61 +0.7
4,120,396 + PfGW456L13_3659 0.61 +0.4
4,120,396 + PfGW456L13_3659 0.61 +0.1
4,120,396 + PfGW456L13_3659 0.61 +2.0
4,120,397 - PfGW456L13_3659 0.61 +0.5
4,120,397 - PfGW456L13_3659 0.61 -1.1
4,120,397 - PfGW456L13_3659 0.61 -2.4
4,120,397 - PfGW456L13_3659 0.61 -1.9
4,120,397 - PfGW456L13_3659 0.61 +1.5
4,120,397 - PfGW456L13_3659 0.61 +0.5
4,120,397 - PfGW456L13_3659 0.61 +0.0
4,120,397 - PfGW456L13_3659 0.61 -1.7
4,120,456 + PfGW456L13_3659 0.72 -2.1
4,120,457 - PfGW456L13_3659 0.72 -2.0
4,120,457 - PfGW456L13_3659 0.72 +1.3
4,120,531 + PfGW456L13_3659 0.85 +0.9
4,120,531 + PfGW456L13_3659 0.85 -1.1
4,120,615 + -2.8
4,120,616 - +0.4
4,120,623 + -2.1
4,120,623 + +1.2
4,120,693 + -1.4
4,120,693 + +1.8
4,120,694 - +1.0
4,120,694 - -1.9
4,120,694 - -0.3
4,120,694 - +0.3
4,120,694 - +1.1
4,120,753 - -2.6
4,120,788 - +0.0
4,120,788 - +2.5
4,120,831 + -2.6
4,120,831 + -1.6
4,120,831 + +0.3
4,120,831 + +1.5
4,120,831 + +0.4
4,120,831 + +1.9
4,120,831 + -0.1
4,120,831 + +0.3
4,120,831 + -0.1
4,120,832 - -2.4
4,120,832 - -1.9
4,120,832 - -1.4
4,120,832 - -1.0
4,120,832 - -1.0
4,120,832 - +1.3
4,120,832 - +0.4

Or see this region's nucleotide sequence