Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_230

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_229 and PfGW456L13_230 are separated by 34 nucleotidesPfGW456L13_230 and PfGW456L13_231 are separated by 48 nucleotides PfGW456L13_229 - Na(+)/H(+) antiporter, at 271,395 to 273,137 _229 PfGW456L13_230 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 273,172 to 276,540 _230 PfGW456L13_231 - Selenoprotein O and cysteine-containing homologs, at 276,589 to 278,052 _231 Position (kb) 273 274 275 276 277Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 272.347 kb on + strand, within PfGW456L13_229at 272.347 kb on + strand, within PfGW456L13_229at 272.347 kb on + strand, within PfGW456L13_229at 272.347 kb on + strand, within PfGW456L13_229at 272.347 kb on + strand, within PfGW456L13_229at 272.348 kb on - strand, within PfGW456L13_229at 272.348 kb on - strand, within PfGW456L13_229at 272.481 kb on + strand, within PfGW456L13_229at 272.481 kb on + strand, within PfGW456L13_229at 272.481 kb on + strand, within PfGW456L13_229at 272.482 kb on - strand, within PfGW456L13_229at 272.482 kb on - strand, within PfGW456L13_229at 272.482 kb on - strand, within PfGW456L13_229at 272.482 kb on - strand, within PfGW456L13_229at 272.482 kb on - strand, within PfGW456L13_229at 272.482 kb on - strand, within PfGW456L13_229at 272.502 kb on - strand, within PfGW456L13_229at 272.502 kb on - strand, within PfGW456L13_229at 272.646 kb on + strand, within PfGW456L13_229at 272.699 kb on + strand, within PfGW456L13_229at 272.700 kb on - strand, within PfGW456L13_229at 272.762 kb on + strand, within PfGW456L13_229at 272.765 kb on + strand, within PfGW456L13_229at 272.765 kb on + strand, within PfGW456L13_229at 272.765 kb on + strand, within PfGW456L13_229at 272.765 kb on + strand, within PfGW456L13_229at 272.765 kb on + strand, within PfGW456L13_229at 272.765 kb on + strand, within PfGW456L13_229at 272.765 kb on + strand, within PfGW456L13_229at 272.765 kb on + strand, within PfGW456L13_229at 272.766 kb on - strand, within PfGW456L13_229at 272.890 kb on + strand, within PfGW456L13_229at 272.891 kb on - strand, within PfGW456L13_229at 273.135 kb on + strandat 273.135 kb on + strandat 273.135 kb on + strandat 273.136 kb on - strandat 273.172 kb on - strandat 273.177 kb on + strandat 273.366 kb on + strandat 273.397 kb on + strandat 273.397 kb on + strandat 273.397 kb on + strandat 273.398 kb on - strandat 273.660 kb on - strand, within PfGW456L13_230at 273.660 kb on - strand, within PfGW456L13_230at 273.689 kb on + strand, within PfGW456L13_230at 273.689 kb on + strand, within PfGW456L13_230at 273.689 kb on + strand, within PfGW456L13_230at 273.690 kb on - strand, within PfGW456L13_230at 273.693 kb on + strand, within PfGW456L13_230at 273.693 kb on + strand, within PfGW456L13_230at 273.693 kb on + strand, within PfGW456L13_230at 273.693 kb on + strand, within PfGW456L13_230at 273.694 kb on - strand, within PfGW456L13_230at 273.694 kb on - strand, within PfGW456L13_230at 273.694 kb on - strand, within PfGW456L13_230at 274.036 kb on + strand, within PfGW456L13_230at 274.037 kb on - strand, within PfGW456L13_230at 274.186 kb on + strand, within PfGW456L13_230at 274.261 kb on + strand, within PfGW456L13_230at 274.262 kb on - strand, within PfGW456L13_230at 274.262 kb on - strand, within PfGW456L13_230at 274.312 kb on + strand, within PfGW456L13_230at 274.312 kb on + strand, within PfGW456L13_230at 274.312 kb on + strand, within PfGW456L13_230at 274.312 kb on + strand, within PfGW456L13_230at 274.312 kb on + strand, within PfGW456L13_230at 274.313 kb on - strand, within PfGW456L13_230at 274.313 kb on - strand, within PfGW456L13_230at 274.605 kb on + strand, within PfGW456L13_230at 274.617 kb on - strand, within PfGW456L13_230at 274.721 kb on + strand, within PfGW456L13_230at 274.721 kb on + strand, within PfGW456L13_230at 274.721 kb on + strand, within PfGW456L13_230at 274.721 kb on + strand, within PfGW456L13_230at 274.722 kb on - strand, within PfGW456L13_230at 274.722 kb on - strand, within PfGW456L13_230at 274.722 kb on - strand, within PfGW456L13_230at 274.723 kb on + strand, within PfGW456L13_230at 274.785 kb on + strand, within PfGW456L13_230at 274.939 kb on + strand, within PfGW456L13_230at 274.940 kb on - strand, within PfGW456L13_230at 275.069 kb on + strand, within PfGW456L13_230at 275.143 kb on + strand, within PfGW456L13_230at 275.143 kb on + strand, within PfGW456L13_230at 275.284 kb on + strand, within PfGW456L13_230at 275.284 kb on + strand, within PfGW456L13_230at 275.284 kb on + strand, within PfGW456L13_230at 275.284 kb on + strand, within PfGW456L13_230at 275.285 kb on - strand, within PfGW456L13_230at 275.285 kb on - strand, within PfGW456L13_230at 275.287 kb on + strand, within PfGW456L13_230at 275.287 kb on + strand, within PfGW456L13_230at 275.287 kb on + strand, within PfGW456L13_230at 275.288 kb on - strand, within PfGW456L13_230at 275.288 kb on - strand, within PfGW456L13_230at 275.288 kb on - strand, within PfGW456L13_230at 275.288 kb on - strand, within PfGW456L13_230at 275.557 kb on + strand, within PfGW456L13_230at 275.557 kb on + strand, within PfGW456L13_230at 275.557 kb on + strand, within PfGW456L13_230at 275.558 kb on - strand, within PfGW456L13_230at 275.558 kb on - strand, within PfGW456L13_230at 275.558 kb on - strand, within PfGW456L13_230at 275.558 kb on - strand, within PfGW456L13_230at 275.594 kb on - strand, within PfGW456L13_230at 275.620 kb on + strand, within PfGW456L13_230at 275.620 kb on + strand, within PfGW456L13_230at 275.621 kb on - strand, within PfGW456L13_230at 275.809 kb on + strand, within PfGW456L13_230at 275.809 kb on + strand, within PfGW456L13_230at 275.809 kb on + strand, within PfGW456L13_230at 275.810 kb on - strand, within PfGW456L13_230at 275.810 kb on - strand, within PfGW456L13_230at 275.810 kb on - strand, within PfGW456L13_230at 275.810 kb on - strand, within PfGW456L13_230at 275.810 kb on - strand, within PfGW456L13_230at 275.858 kb on + strand, within PfGW456L13_230at 275.858 kb on + strand, within PfGW456L13_230at 275.859 kb on - strand, within PfGW456L13_230at 276.259 kb on + strandat 276.259 kb on + strandat 276.259 kb on + strandat 276.259 kb on + strandat 276.260 kb on - strandat 276.418 kb on + strandat 276.445 kb on + strandat 276.445 kb on + strandat 276.445 kb on + strandat 276.446 kb on - strandat 276.446 kb on - strandat 276.446 kb on - strandat 276.446 kb on - strandat 276.446 kb on - strandat 276.446 kb on - strandat 276.679 kb on - strandat 276.841 kb on + strand, within PfGW456L13_231at 276.841 kb on + strand, within PfGW456L13_231at 276.841 kb on + strand, within PfGW456L13_231at 276.842 kb on - strand, within PfGW456L13_231at 276.842 kb on - strand, within PfGW456L13_231at 276.842 kb on - strand, within PfGW456L13_231at 276.889 kb on + strand, within PfGW456L13_231at 276.889 kb on + strand, within PfGW456L13_231at 276.890 kb on - strand, within PfGW456L13_231at 276.890 kb on - strand, within PfGW456L13_231at 276.890 kb on - strand, within PfGW456L13_231at 276.890 kb on - strand, within PfGW456L13_231at 276.890 kb on - strand, within PfGW456L13_231at 277.030 kb on - strand, within PfGW456L13_231at 277.056 kb on - strand, within PfGW456L13_231at 277.153 kb on + strand, within PfGW456L13_231at 277.154 kb on - strand, within PfGW456L13_231at 277.160 kb on - strand, within PfGW456L13_231at 277.162 kb on + strand, within PfGW456L13_231at 277.162 kb on + strand, within PfGW456L13_231at 277.162 kb on + strand, within PfGW456L13_231at 277.163 kb on - strand, within PfGW456L13_231at 277.163 kb on - strand, within PfGW456L13_231at 277.163 kb on - strand, within PfGW456L13_231at 277.312 kb on + strand, within PfGW456L13_231at 277.312 kb on + strand, within PfGW456L13_231at 277.312 kb on + strand, within PfGW456L13_231at 277.313 kb on - strand, within PfGW456L13_231at 277.313 kb on - strand, within PfGW456L13_231

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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272,347 + PfGW456L13_229 0.55 -1.1
272,347 + PfGW456L13_229 0.55 -0.4
272,347 + PfGW456L13_229 0.55 +1.0
272,347 + PfGW456L13_229 0.55 -1.5
272,347 + PfGW456L13_229 0.55 +2.0
272,348 - PfGW456L13_229 0.55 -0.8
272,348 - PfGW456L13_229 0.55 -1.9
272,481 + PfGW456L13_229 0.62 +0.3
272,481 + PfGW456L13_229 0.62 -0.9
272,481 + PfGW456L13_229 0.62 -0.2
272,482 - PfGW456L13_229 0.62 +0.4
272,482 - PfGW456L13_229 0.62 -2.2
272,482 - PfGW456L13_229 0.62 -2.9
272,482 - PfGW456L13_229 0.62 +0.6
272,482 - PfGW456L13_229 0.62 +1.9
272,482 - PfGW456L13_229 0.62 -1.2
272,502 - PfGW456L13_229 0.64 -2.2
272,502 - PfGW456L13_229 0.64 -0.9
272,646 + PfGW456L13_229 0.72 -0.9
272,699 + PfGW456L13_229 0.75 +1.6
272,700 - PfGW456L13_229 0.75 +1.1
272,762 + PfGW456L13_229 0.78 -0.1
272,765 + PfGW456L13_229 0.79 -0.4
272,765 + PfGW456L13_229 0.79 +2.3
272,765 + PfGW456L13_229 0.79 +1.8
272,765 + PfGW456L13_229 0.79 -1.3
272,765 + PfGW456L13_229 0.79 +0.1
272,765 + PfGW456L13_229 0.79 -1.3
272,765 + PfGW456L13_229 0.79 -2.3
272,765 + PfGW456L13_229 0.79 +1.2
272,766 - PfGW456L13_229 0.79 -0.4
272,890 + PfGW456L13_229 0.86 -0.7
272,891 - PfGW456L13_229 0.86 -0.2
273,135 + +1.1
273,135 + -0.1
273,135 + -2.2
273,136 - +0.1
273,172 - +0.1
273,177 + +0.1
273,366 + +0.9
273,397 + +0.4
273,397 + +2.3
273,397 + -0.1
273,398 - +0.6
273,660 - PfGW456L13_230 0.14 +0.7
273,660 - PfGW456L13_230 0.14 -0.2
273,689 + PfGW456L13_230 0.15 +1.9
273,689 + PfGW456L13_230 0.15 -0.6
273,689 + PfGW456L13_230 0.15 +0.7
273,690 - PfGW456L13_230 0.15 -2.5
273,693 + PfGW456L13_230 0.15 +0.8
273,693 + PfGW456L13_230 0.15 -0.5
273,693 + PfGW456L13_230 0.15 -0.0
273,693 + PfGW456L13_230 0.15 -0.9
273,694 - PfGW456L13_230 0.15 +1.7
273,694 - PfGW456L13_230 0.15 +1.1
273,694 - PfGW456L13_230 0.15 -0.8
274,036 + PfGW456L13_230 0.26 +0.0
274,037 - PfGW456L13_230 0.26 -1.8
274,186 + PfGW456L13_230 0.30 -1.0
274,261 + PfGW456L13_230 0.32 +0.3
274,262 - PfGW456L13_230 0.32 -1.4
274,262 - PfGW456L13_230 0.32 -0.6
274,312 + PfGW456L13_230 0.34 -2.4
274,312 + PfGW456L13_230 0.34 +0.4
274,312 + PfGW456L13_230 0.34 -0.8
274,312 + PfGW456L13_230 0.34 -0.8
274,312 + PfGW456L13_230 0.34 -1.9
274,313 - PfGW456L13_230 0.34 -1.0
274,313 - PfGW456L13_230 0.34 -0.1
274,605 + PfGW456L13_230 0.43 +0.2
274,617 - PfGW456L13_230 0.43 -1.3
274,721 + PfGW456L13_230 0.46 -2.3
274,721 + PfGW456L13_230 0.46 +1.4
274,721 + PfGW456L13_230 0.46 -1.1
274,721 + PfGW456L13_230 0.46 -1.3
274,722 - PfGW456L13_230 0.46 -2.3
274,722 - PfGW456L13_230 0.46 +1.6
274,722 - PfGW456L13_230 0.46 -2.0
274,723 + PfGW456L13_230 0.46 +0.2
274,785 + PfGW456L13_230 0.48 +0.7
274,939 + PfGW456L13_230 0.52 -1.0
274,940 - PfGW456L13_230 0.52 -0.2
275,069 + PfGW456L13_230 0.56 +1.3
275,143 + PfGW456L13_230 0.59 +0.0
275,143 + PfGW456L13_230 0.59 -0.4
275,284 + PfGW456L13_230 0.63 +1.4
275,284 + PfGW456L13_230 0.63 +0.7
275,284 + PfGW456L13_230 0.63 +1.9
275,284 + PfGW456L13_230 0.63 -1.3
275,285 - PfGW456L13_230 0.63 +1.4
275,285 - PfGW456L13_230 0.63 -3.6
275,287 + PfGW456L13_230 0.63 -0.0
275,287 + PfGW456L13_230 0.63 +3.4
275,287 + PfGW456L13_230 0.63 -0.9
275,288 - PfGW456L13_230 0.63 -2.1
275,288 - PfGW456L13_230 0.63 -0.0
275,288 - PfGW456L13_230 0.63 -1.8
275,288 - PfGW456L13_230 0.63 -0.7
275,557 + PfGW456L13_230 0.71 +1.6
275,557 + PfGW456L13_230 0.71 -0.3
275,557 + PfGW456L13_230 0.71 -1.1
275,558 - PfGW456L13_230 0.71 +0.6
275,558 - PfGW456L13_230 0.71 -1.3
275,558 - PfGW456L13_230 0.71 -0.3
275,558 - PfGW456L13_230 0.71 -0.9
275,594 - PfGW456L13_230 0.72 +0.8
275,620 + PfGW456L13_230 0.73 +0.3
275,620 + PfGW456L13_230 0.73 -1.8
275,621 - PfGW456L13_230 0.73 +2.2
275,809 + PfGW456L13_230 0.78 -1.6
275,809 + PfGW456L13_230 0.78 -0.3
275,809 + PfGW456L13_230 0.78 -1.7
275,810 - PfGW456L13_230 0.78 -0.3
275,810 - PfGW456L13_230 0.78 +0.5
275,810 - PfGW456L13_230 0.78 +1.1
275,810 - PfGW456L13_230 0.78 +1.1
275,810 - PfGW456L13_230 0.78 +0.3
275,858 + PfGW456L13_230 0.80 -2.3
275,858 + PfGW456L13_230 0.80 -0.8
275,859 - PfGW456L13_230 0.80 +3.3
276,259 + +2.0
276,259 + +0.9
276,259 + -1.6
276,259 + +1.0
276,260 - +1.1
276,418 + +0.8
276,445 + -0.8
276,445 + +1.5
276,445 + -1.6
276,446 - -1.3
276,446 - -1.8
276,446 - -2.7
276,446 - -0.4
276,446 - +1.2
276,446 - -0.6
276,679 - +1.8
276,841 + PfGW456L13_231 0.17 +1.6
276,841 + PfGW456L13_231 0.17 +0.1
276,841 + PfGW456L13_231 0.17 -0.2
276,842 - PfGW456L13_231 0.17 -0.8
276,842 - PfGW456L13_231 0.17 -0.1
276,842 - PfGW456L13_231 0.17 -0.4
276,889 + PfGW456L13_231 0.20 -1.4
276,889 + PfGW456L13_231 0.20 +1.3
276,890 - PfGW456L13_231 0.21 +2.3
276,890 - PfGW456L13_231 0.21 -1.8
276,890 - PfGW456L13_231 0.21 +2.4
276,890 - PfGW456L13_231 0.21 -1.8
276,890 - PfGW456L13_231 0.21 -0.6
277,030 - PfGW456L13_231 0.30 +1.9
277,056 - PfGW456L13_231 0.32 +2.2
277,153 + PfGW456L13_231 0.39 +1.9
277,154 - PfGW456L13_231 0.39 +0.7
277,160 - PfGW456L13_231 0.39 +1.3
277,162 + PfGW456L13_231 0.39 -1.5
277,162 + PfGW456L13_231 0.39 +0.6
277,162 + PfGW456L13_231 0.39 +0.2
277,163 - PfGW456L13_231 0.39 -2.8
277,163 - PfGW456L13_231 0.39 -0.6
277,163 - PfGW456L13_231 0.39 -0.7
277,312 + PfGW456L13_231 0.49 +0.3
277,312 + PfGW456L13_231 0.49 +1.1
277,312 + PfGW456L13_231 0.49 +1.3
277,313 - PfGW456L13_231 0.49 -2.0
277,313 - PfGW456L13_231 0.49 -0.5

Or see this region's nucleotide sequence