Strain Fitness in Pseudomonas sp. S08-1 around OH686_22260

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_22255 and OH686_22260 are separated by 134 nucleotidesOH686_22260 and OH686_22265 are separated by 226 nucleotides OH686_22255: OH686_22255 - MoxR-like ATPase in aerotolerance operon, at 4,527,790 to 4,528,749 _22255 OH686_22260: OH686_22260 - hypothetical protein, at 4,528,884 to 4,529,738 _22260 OH686_22265: OH686_22265 - NAD-specific glutamate dehydrogenase , large form, at 4,529,965 to 4,534,827 _22265 Position (kb) 4528 4529 4530Strain fitness (log2 ratio) -2 -1 0 1 2at 4528.005 kb on - strand, within OH686_22255at 4528.076 kb on + strand, within OH686_22255at 4528.077 kb on - strand, within OH686_22255at 4528.098 kb on + strand, within OH686_22255at 4528.098 kb on + strand, within OH686_22255at 4528.099 kb on - strand, within OH686_22255at 4528.099 kb on - strand, within OH686_22255at 4528.099 kb on - strand, within OH686_22255at 4528.099 kb on - strand, within OH686_22255at 4528.099 kb on - strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.100 kb on + strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.101 kb on - strand, within OH686_22255at 4528.286 kb on + strand, within OH686_22255at 4528.286 kb on + strand, within OH686_22255at 4528.286 kb on + strand, within OH686_22255at 4528.286 kb on + strand, within OH686_22255at 4528.349 kb on + strand, within OH686_22255at 4528.349 kb on + strand, within OH686_22255at 4528.349 kb on + strand, within OH686_22255at 4528.349 kb on + strand, within OH686_22255at 4528.349 kb on + strand, within OH686_22255at 4528.350 kb on - strand, within OH686_22255at 4528.350 kb on - strand, within OH686_22255at 4528.350 kb on - strand, within OH686_22255at 4528.408 kb on + strand, within OH686_22255at 4528.408 kb on + strand, within OH686_22255at 4528.408 kb on + strand, within OH686_22255at 4528.408 kb on + strand, within OH686_22255at 4528.408 kb on + strand, within OH686_22255at 4528.409 kb on - strand, within OH686_22255at 4528.409 kb on - strand, within OH686_22255at 4528.409 kb on - strand, within OH686_22255at 4528.409 kb on - strand, within OH686_22255at 4528.502 kb on + strand, within OH686_22255at 4528.502 kb on + strand, within OH686_22255at 4528.502 kb on + strand, within OH686_22255at 4528.503 kb on - strand, within OH686_22255at 4528.503 kb on - strand, within OH686_22255at 4528.503 kb on - strand, within OH686_22255at 4528.806 kb on + strandat 4528.806 kb on + strandat 4528.806 kb on + strandat 4528.807 kb on - strandat 4528.807 kb on - strandat 4528.807 kb on - strandat 4528.807 kb on - strandat 4528.813 kb on - strandat 4528.813 kb on - strandat 4528.813 kb on - strandat 4528.813 kb on - strandat 4528.813 kb on - strandat 4528.813 kb on - strandat 4529.008 kb on - strand, within OH686_22260at 4529.023 kb on + strand, within OH686_22260at 4529.023 kb on + strand, within OH686_22260at 4529.023 kb on + strand, within OH686_22260at 4529.024 kb on - strand, within OH686_22260at 4529.024 kb on - strand, within OH686_22260at 4529.026 kb on + strand, within OH686_22260at 4529.026 kb on + strand, within OH686_22260at 4529.026 kb on + strand, within OH686_22260at 4529.027 kb on - strand, within OH686_22260at 4529.027 kb on - strand, within OH686_22260at 4529.027 kb on - strand, within OH686_22260at 4529.027 kb on - strand, within OH686_22260at 4529.027 kb on - strand, within OH686_22260at 4529.027 kb on - strand, within OH686_22260at 4529.122 kb on + strand, within OH686_22260at 4529.128 kb on + strand, within OH686_22260at 4529.128 kb on + strand, within OH686_22260at 4529.129 kb on - strand, within OH686_22260at 4529.129 kb on - strand, within OH686_22260at 4529.266 kb on + strand, within OH686_22260at 4529.266 kb on + strand, within OH686_22260at 4529.266 kb on + strand, within OH686_22260at 4529.267 kb on - strand, within OH686_22260at 4529.267 kb on - strand, within OH686_22260at 4529.302 kb on + strand, within OH686_22260at 4529.302 kb on + strand, within OH686_22260at 4529.302 kb on + strand, within OH686_22260at 4529.302 kb on + strand, within OH686_22260at 4529.302 kb on + strand, within OH686_22260at 4529.302 kb on + strand, within OH686_22260at 4529.303 kb on - strand, within OH686_22260at 4529.303 kb on - strand, within OH686_22260at 4529.303 kb on - strand, within OH686_22260at 4529.303 kb on - strand, within OH686_22260at 4529.303 kb on - strand, within OH686_22260at 4529.303 kb on - strand, within OH686_22260at 4529.303 kb on - strand, within OH686_22260at 4529.303 kb on - strand, within OH686_22260at 4529.303 kb on - strand, within OH686_22260at 4529.303 kb on - strand, within OH686_22260at 4529.326 kb on + strand, within OH686_22260at 4529.327 kb on - strand, within OH686_22260at 4529.327 kb on - strand, within OH686_22260at 4529.327 kb on - strand, within OH686_22260at 4529.327 kb on - strand, within OH686_22260at 4529.413 kb on + strand, within OH686_22260at 4529.413 kb on + strand, within OH686_22260at 4529.413 kb on + strand, within OH686_22260at 4529.413 kb on + strand, within OH686_22260at 4529.413 kb on + strand, within OH686_22260at 4529.413 kb on + strand, within OH686_22260at 4529.413 kb on + strand, within OH686_22260at 4529.413 kb on + strand, within OH686_22260at 4529.413 kb on + strand, within OH686_22260at 4529.414 kb on - strand, within OH686_22260at 4529.414 kb on - strand, within OH686_22260at 4529.414 kb on - strand, within OH686_22260at 4529.414 kb on - strand, within OH686_22260at 4529.414 kb on - strand, within OH686_22260at 4529.419 kb on + strand, within OH686_22260at 4529.419 kb on + strand, within OH686_22260at 4529.419 kb on + strand, within OH686_22260at 4529.420 kb on - strand, within OH686_22260at 4529.420 kb on - strand, within OH686_22260at 4529.420 kb on - strand, within OH686_22260at 4529.420 kb on - strand, within OH686_22260at 4529.467 kb on + strand, within OH686_22260at 4529.467 kb on + strand, within OH686_22260at 4529.467 kb on + strand, within OH686_22260at 4529.467 kb on + strand, within OH686_22260at 4529.467 kb on + strand, within OH686_22260at 4529.467 kb on + strand, within OH686_22260at 4529.467 kb on + strand, within OH686_22260at 4529.467 kb on + strand, within OH686_22260at 4529.467 kb on + strand, within OH686_22260at 4529.467 kb on + strand, within OH686_22260at 4529.468 kb on - strand, within OH686_22260at 4529.468 kb on - strand, within OH686_22260at 4529.468 kb on - strand, within OH686_22260at 4529.468 kb on - strand, within OH686_22260at 4529.468 kb on - strand, within OH686_22260at 4529.468 kb on - strand, within OH686_22260at 4529.468 kb on - strand, within OH686_22260at 4529.596 kb on + strand, within OH686_22260at 4529.755 kb on + strandat 4529.756 kb on - strandat 4529.756 kb on - strandat 4529.772 kb on + strandat 4529.772 kb on + strandat 4529.772 kb on + strandat 4529.773 kb on - strandat 4529.773 kb on - strandat 4529.773 kb on - strandat 4529.773 kb on - strandat 4529.773 kb on - strandat 4529.773 kb on - strandat 4529.773 kb on - strandat 4529.773 kb on - strandat 4529.773 kb on - strandat 4529.773 kb on - strandat 4529.805 kb on + strandat 4529.805 kb on + strandat 4529.806 kb on - strandat 4529.806 kb on - strandat 4529.845 kb on + strandat 4529.845 kb on + strandat 4529.846 kb on - strandat 4529.846 kb on - strandat 4529.893 kb on + strandat 4529.900 kb on + strandat 4529.942 kb on - strandat 4529.942 kb on - strandat 4530.202 kb on + strandat 4530.202 kb on + strandat 4530.202 kb on + strandat 4530.202 kb on + strandat 4530.203 kb on - strandat 4530.203 kb on - strandat 4530.214 kb on + strandat 4530.214 kb on + strandat 4530.320 kb on - strandat 4530.320 kb on - strandat 4530.439 kb on + strandat 4530.439 kb on + strandat 4530.440 kb on - strandat 4530.440 kb on - strandat 4530.440 kb on - strandat 4530.440 kb on - strandat 4530.440 kb on - strandat 4530.518 kb on + strand, within OH686_22265at 4530.518 kb on + strand, within OH686_22265at 4530.518 kb on + strand, within OH686_22265at 4530.519 kb on - strand, within OH686_22265at 4530.519 kb on - strand, within OH686_22265at 4530.519 kb on - strand, within OH686_22265at 4530.519 kb on - strand, within OH686_22265at 4530.519 kb on - strand, within OH686_22265at 4530.519 kb on - strand, within OH686_22265at 4530.677 kb on - strand, within OH686_22265at 4530.724 kb on + strand, within OH686_22265at 4530.725 kb on - strand, within OH686_22265at 4530.725 kb on - strand, within OH686_22265

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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4,528,005 - OH686_22255 0.22 -0.5
4,528,076 + OH686_22255 0.30 +0.4
4,528,077 - OH686_22255 0.30 -0.3
4,528,098 + OH686_22255 0.32 -0.8
4,528,098 + OH686_22255 0.32 +0.3
4,528,099 - OH686_22255 0.32 -0.2
4,528,099 - OH686_22255 0.32 -0.1
4,528,099 - OH686_22255 0.32 +0.3
4,528,099 - OH686_22255 0.32 -0.4
4,528,099 - OH686_22255 0.32 -0.0
4,528,100 + OH686_22255 0.32 +0.9
4,528,100 + OH686_22255 0.32 -2.2
4,528,100 + OH686_22255 0.32 +0.1
4,528,100 + OH686_22255 0.32 -0.8
4,528,100 + OH686_22255 0.32 +0.6
4,528,100 + OH686_22255 0.32 -0.1
4,528,100 + OH686_22255 0.32 -2.0
4,528,100 + OH686_22255 0.32 -0.6
4,528,100 + OH686_22255 0.32 +0.3
4,528,100 + OH686_22255 0.32 -0.6
4,528,100 + OH686_22255 0.32 -0.4
4,528,100 + OH686_22255 0.32 +0.3
4,528,100 + OH686_22255 0.32 +1.3
4,528,100 + OH686_22255 0.32 +1.1
4,528,100 + OH686_22255 0.32 +2.0
4,528,100 + OH686_22255 0.32 +1.1
4,528,101 - OH686_22255 0.32 -0.2
4,528,101 - OH686_22255 0.32 -1.9
4,528,101 - OH686_22255 0.32 -0.3
4,528,101 - OH686_22255 0.32 -1.0
4,528,101 - OH686_22255 0.32 -1.5
4,528,101 - OH686_22255 0.32 -0.4
4,528,101 - OH686_22255 0.32 +0.9
4,528,101 - OH686_22255 0.32 -0.1
4,528,101 - OH686_22255 0.32 -0.1
4,528,101 - OH686_22255 0.32 -0.1
4,528,101 - OH686_22255 0.32 -0.3
4,528,101 - OH686_22255 0.32 +1.1
4,528,101 - OH686_22255 0.32 -2.0
4,528,101 - OH686_22255 0.32 -0.1
4,528,101 - OH686_22255 0.32 +0.2
4,528,101 - OH686_22255 0.32 +1.1
4,528,101 - OH686_22255 0.32 +0.9
4,528,286 + OH686_22255 0.52 -0.1
4,528,286 + OH686_22255 0.52 +0.0
4,528,286 + OH686_22255 0.52 -1.2
4,528,286 + OH686_22255 0.52 +0.2
4,528,349 + OH686_22255 0.58 -0.6
4,528,349 + OH686_22255 0.58 +0.7
4,528,349 + OH686_22255 0.58 -0.3
4,528,349 + OH686_22255 0.58 +0.8
4,528,349 + OH686_22255 0.58 -0.3
4,528,350 - OH686_22255 0.58 +2.2
4,528,350 - OH686_22255 0.58 +0.1
4,528,350 - OH686_22255 0.58 +0.4
4,528,408 + OH686_22255 0.64 +1.1
4,528,408 + OH686_22255 0.64 +0.7
4,528,408 + OH686_22255 0.64 +0.3
4,528,408 + OH686_22255 0.64 +0.8
4,528,408 + OH686_22255 0.64 +0.4
4,528,409 - OH686_22255 0.64 +0.0
4,528,409 - OH686_22255 0.64 -1.0
4,528,409 - OH686_22255 0.64 +0.4
4,528,409 - OH686_22255 0.64 +0.3
4,528,502 + OH686_22255 0.74 -0.4
4,528,502 + OH686_22255 0.74 +0.2
4,528,502 + OH686_22255 0.74 +0.5
4,528,503 - OH686_22255 0.74 -0.1
4,528,503 - OH686_22255 0.74 +0.4
4,528,503 - OH686_22255 0.74 +0.7
4,528,806 + -0.1
4,528,806 + -0.9
4,528,806 + -0.5
4,528,807 - -0.7
4,528,807 - +0.2
4,528,807 - +0.4
4,528,807 - +0.0
4,528,813 - +2.4
4,528,813 - +0.6
4,528,813 - +0.2
4,528,813 - +0.4
4,528,813 - +1.9
4,528,813 - -0.8
4,529,008 - OH686_22260 0.15 -0.4
4,529,023 + OH686_22260 0.16 +0.3
4,529,023 + OH686_22260 0.16 -0.7
4,529,023 + OH686_22260 0.16 -1.1
4,529,024 - OH686_22260 0.16 +0.1
4,529,024 - OH686_22260 0.16 +0.1
4,529,026 + OH686_22260 0.17 -0.1
4,529,026 + OH686_22260 0.17 +0.0
4,529,026 + OH686_22260 0.17 +0.1
4,529,027 - OH686_22260 0.17 +0.1
4,529,027 - OH686_22260 0.17 -0.1
4,529,027 - OH686_22260 0.17 +0.7
4,529,027 - OH686_22260 0.17 +0.3
4,529,027 - OH686_22260 0.17 +0.4
4,529,027 - OH686_22260 0.17 -2.0
4,529,122 + OH686_22260 0.28 -1.0
4,529,128 + OH686_22260 0.29 +0.4
4,529,128 + OH686_22260 0.29 -0.0
4,529,129 - OH686_22260 0.29 +0.6
4,529,129 - OH686_22260 0.29 +0.4
4,529,266 + OH686_22260 0.45 -0.3
4,529,266 + OH686_22260 0.45 -0.7
4,529,266 + OH686_22260 0.45 -0.6
4,529,267 - OH686_22260 0.45 -0.2
4,529,267 - OH686_22260 0.45 -0.3
4,529,302 + OH686_22260 0.49 +0.2
4,529,302 + OH686_22260 0.49 +1.2
4,529,302 + OH686_22260 0.49 -0.8
4,529,302 + OH686_22260 0.49 +0.1
4,529,302 + OH686_22260 0.49 -0.3
4,529,302 + OH686_22260 0.49 +0.1
4,529,303 - OH686_22260 0.49 +0.4
4,529,303 - OH686_22260 0.49 -0.1
4,529,303 - OH686_22260 0.49 +0.2
4,529,303 - OH686_22260 0.49 -0.2
4,529,303 - OH686_22260 0.49 +0.4
4,529,303 - OH686_22260 0.49 +1.0
4,529,303 - OH686_22260 0.49 -0.5
4,529,303 - OH686_22260 0.49 +0.5
4,529,303 - OH686_22260 0.49 -0.0
4,529,303 - OH686_22260 0.49 +0.2
4,529,326 + OH686_22260 0.52 +0.5
4,529,327 - OH686_22260 0.52 -0.1
4,529,327 - OH686_22260 0.52 -0.4
4,529,327 - OH686_22260 0.52 -0.3
4,529,327 - OH686_22260 0.52 +0.1
4,529,413 + OH686_22260 0.62 -0.0
4,529,413 + OH686_22260 0.62 +0.0
4,529,413 + OH686_22260 0.62 -0.1
4,529,413 + OH686_22260 0.62 +0.3
4,529,413 + OH686_22260 0.62 -0.6
4,529,413 + OH686_22260 0.62 +0.4
4,529,413 + OH686_22260 0.62 +1.2
4,529,413 + OH686_22260 0.62 -0.4
4,529,413 + OH686_22260 0.62 -0.2
4,529,414 - OH686_22260 0.62 +0.4
4,529,414 - OH686_22260 0.62 -1.9
4,529,414 - OH686_22260 0.62 +0.6
4,529,414 - OH686_22260 0.62 -0.4
4,529,414 - OH686_22260 0.62 -0.3
4,529,419 + OH686_22260 0.63 -0.4
4,529,419 + OH686_22260 0.63 -1.3
4,529,419 + OH686_22260 0.63 +0.5
4,529,420 - OH686_22260 0.63 +1.7
4,529,420 - OH686_22260 0.63 -0.2
4,529,420 - OH686_22260 0.63 -0.1
4,529,420 - OH686_22260 0.63 -0.4
4,529,467 + OH686_22260 0.68 +1.4
4,529,467 + OH686_22260 0.68 +0.7
4,529,467 + OH686_22260 0.68 +0.5
4,529,467 + OH686_22260 0.68 +0.4
4,529,467 + OH686_22260 0.68 -0.0
4,529,467 + OH686_22260 0.68 +0.7
4,529,467 + OH686_22260 0.68 -0.5
4,529,467 + OH686_22260 0.68 -0.9
4,529,467 + OH686_22260 0.68 +0.2
4,529,467 + OH686_22260 0.68 -0.0
4,529,468 - OH686_22260 0.68 +0.2
4,529,468 - OH686_22260 0.68 -0.2
4,529,468 - OH686_22260 0.68 +0.4
4,529,468 - OH686_22260 0.68 -0.5
4,529,468 - OH686_22260 0.68 +1.2
4,529,468 - OH686_22260 0.68 -0.3
4,529,468 - OH686_22260 0.68 +0.6
4,529,596 + OH686_22260 0.83 +0.7
4,529,755 + +0.7
4,529,756 - -0.2
4,529,756 - -0.2
4,529,772 + -0.2
4,529,772 + -0.2
4,529,772 + +0.5
4,529,773 - -0.3
4,529,773 - +0.8
4,529,773 - +0.2
4,529,773 - -0.5
4,529,773 - -0.7
4,529,773 - -0.9
4,529,773 - -0.5
4,529,773 - +1.3
4,529,773 - -0.1
4,529,773 - +0.2
4,529,805 + -0.3
4,529,805 + -0.3
4,529,806 - -1.1
4,529,806 - +0.0
4,529,845 + -0.6
4,529,845 + -0.1
4,529,846 - +0.0
4,529,846 - -0.2
4,529,893 + +0.3
4,529,900 + +0.6
4,529,942 - -0.2
4,529,942 - -0.2
4,530,202 + +0.1
4,530,202 + +1.2
4,530,202 + +0.7
4,530,202 + -0.0
4,530,203 - +0.5
4,530,203 - -0.2
4,530,214 + -0.1
4,530,214 + +0.5
4,530,320 - -1.1
4,530,320 - -0.6
4,530,439 + -0.1
4,530,439 + -0.1
4,530,440 - -1.2
4,530,440 - -0.2
4,530,440 - -0.9
4,530,440 - +0.9
4,530,440 - -0.5
4,530,518 + OH686_22265 0.11 +2.2
4,530,518 + OH686_22265 0.11 -0.3
4,530,518 + OH686_22265 0.11 +0.9
4,530,519 - OH686_22265 0.11 -0.2
4,530,519 - OH686_22265 0.11 -0.4
4,530,519 - OH686_22265 0.11 +0.6
4,530,519 - OH686_22265 0.11 +0.0
4,530,519 - OH686_22265 0.11 -0.4
4,530,519 - OH686_22265 0.11 -0.2
4,530,677 - OH686_22265 0.15 +0.1
4,530,724 + OH686_22265 0.16 -0.7
4,530,725 - OH686_22265 0.16 -0.2
4,530,725 - OH686_22265 0.16 -0.3

Or see this region's nucleotide sequence