Strain Fitness in Pseudomonas sp. S08-1 around OH686_21840

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21825 and OH686_21830 overlap by 4 nucleotidesOH686_21830 and OH686_21835 overlap by 33 nucleotidesOH686_21835 and OH686_21840 are separated by 75 nucleotidesOH686_21840 and OH686_21845 are separated by 7 nucleotidesOH686_21845 and OH686_21850 overlap by 1 nucleotides OH686_21825: OH686_21825 - lipid kinase YegS, at 4,445,425 to 4,446,324 _21825 OH686_21830: OH686_21830 - Two-component transcriptional response regulator, NarL/FixJ family, at 4,446,321 to 4,446,965 _21830 OH686_21835: OH686_21835 - CDS, at 4,446,933 to 4,447,079 _21835 OH686_21840: OH686_21840 - Chemotaxis response regulator protein-glutamate methylesterase CheB , at 4,447,155 to 4,448,228 _21840 OH686_21845: OH686_21845 - Chemotaxis protein methyltransferase CheR , at 4,448,236 to 4,449,045 _21845 OH686_21850: OH686_21850 - Positive regulator of CheA protein activity (CheW), at 4,449,045 to 4,449,563 _21850 Position (kb) 4447 4448 4449Strain fitness (log2 ratio) -2 -1 0 1 2at 4446.297 kb on + strandat 4446.297 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.358 kb on + strandat 4446.359 kb on - strandat 4446.359 kb on - strandat 4446.359 kb on - strandat 4446.359 kb on - strandat 4446.359 kb on - strandat 4446.483 kb on - strand, within OH686_21830at 4446.483 kb on - strand, within OH686_21830at 4446.483 kb on - strand, within OH686_21830at 4446.593 kb on - strand, within OH686_21830at 4446.593 kb on - strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.661 kb on + strand, within OH686_21830at 4446.662 kb on - strand, within OH686_21830at 4446.693 kb on + strand, within OH686_21830at 4446.693 kb on + strand, within OH686_21830at 4446.694 kb on - strand, within OH686_21830at 4446.694 kb on - strand, within OH686_21830at 4447.077 kb on + strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.078 kb on - strandat 4447.090 kb on + strandat 4447.091 kb on - strandat 4447.091 kb on - strandat 4447.105 kb on + strandat 4447.105 kb on + strandat 4447.105 kb on + strandat 4447.105 kb on + strandat 4447.106 kb on - strandat 4447.106 kb on - strandat 4447.106 kb on - strandat 4447.109 kb on + strandat 4447.110 kb on - strandat 4447.110 kb on - strandat 4447.110 kb on - strandat 4447.150 kb on + strandat 4447.150 kb on + strandat 4447.150 kb on + strandat 4447.150 kb on + strandat 4447.150 kb on + strandat 4447.150 kb on + strandat 4447.151 kb on - strandat 4447.151 kb on - strandat 4447.151 kb on - strandat 4447.151 kb on - strandat 4447.151 kb on - strandat 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.401 kb on + strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.402 kb on - strand, within OH686_21840at 4447.459 kb on + strand, within OH686_21840at 4447.459 kb on + strand, within OH686_21840at 4447.459 kb on + strand, within OH686_21840at 4447.459 kb on + strand, within OH686_21840at 4447.460 kb on - strand, within OH686_21840at 4447.460 kb on - strand, within OH686_21840at 4447.460 kb on - strand, within OH686_21840at 4447.460 kb on - strand, within OH686_21840at 4447.507 kb on - strand, within OH686_21840at 4447.961 kb on + strand, within OH686_21840at 4448.006 kb on + strand, within OH686_21840at 4448.007 kb on - strand, within OH686_21840at 4448.079 kb on + strand, within OH686_21840at 4448.079 kb on + strand, within OH686_21840at 4448.079 kb on + strand, within OH686_21840at 4448.079 kb on + strand, within OH686_21840at 4448.080 kb on - strand, within OH686_21840at 4448.387 kb on + strand, within OH686_21845at 4448.387 kb on + strand, within OH686_21845at 4448.388 kb on - strand, within OH686_21845at 4448.388 kb on - strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.588 kb on + strand, within OH686_21845at 4448.589 kb on - strand, within OH686_21845at 4448.589 kb on - strand, within OH686_21845at 4448.693 kb on + strand, within OH686_21845at 4448.693 kb on + strand, within OH686_21845at 4448.693 kb on + strand, within OH686_21845at 4448.694 kb on - strand, within OH686_21845at 4448.694 kb on - strand, within OH686_21845at 4448.694 kb on - strand, within OH686_21845at 4448.694 kb on - strand, within OH686_21845at 4448.694 kb on - strand, within OH686_21845at 4448.801 kb on + strand, within OH686_21845at 4448.801 kb on + strand, within OH686_21845at 4448.802 kb on - strand, within OH686_21845at 4448.802 kb on - strand, within OH686_21845at 4448.802 kb on - strand, within OH686_21845at 4448.802 kb on - strand, within OH686_21845at 4448.802 kb on - strand, within OH686_21845at 4448.802 kb on - strand, within OH686_21845at 4448.879 kb on + strand, within OH686_21845at 4448.879 kb on + strand, within OH686_21845at 4448.880 kb on - strand, within OH686_21845at 4448.880 kb on - strand, within OH686_21845at 4448.885 kb on + strand, within OH686_21845at 4448.885 kb on + strand, within OH686_21845at 4448.885 kb on + strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4448.886 kb on - strand, within OH686_21845at 4449.000 kb on - strandat 4449.116 kb on + strand, within OH686_21850at 4449.116 kb on + strand, within OH686_21850at 4449.120 kb on - strand, within OH686_21850at 4449.120 kb on - strand, within OH686_21850

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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4,446,297 + +0.1
4,446,297 + +0.5
4,446,358 + +0.3
4,446,358 + +0.3
4,446,358 + -0.3
4,446,358 + -0.2
4,446,358 + +0.9
4,446,358 + +0.4
4,446,358 + -0.4
4,446,358 + -0.6
4,446,358 + +0.3
4,446,358 + +0.7
4,446,358 + +1.2
4,446,358 + -0.9
4,446,358 + -0.4
4,446,359 - +1.3
4,446,359 - -0.5
4,446,359 - -0.2
4,446,359 - +0.9
4,446,359 - +0.9
4,446,483 - OH686_21830 0.25 +0.3
4,446,483 - OH686_21830 0.25 +1.7
4,446,483 - OH686_21830 0.25 +1.1
4,446,593 - OH686_21830 0.42 -0.1
4,446,593 - OH686_21830 0.42 -0.5
4,446,661 + OH686_21830 0.53 +0.4
4,446,661 + OH686_21830 0.53 -0.2
4,446,661 + OH686_21830 0.53 -1.1
4,446,661 + OH686_21830 0.53 +1.4
4,446,661 + OH686_21830 0.53 +0.2
4,446,661 + OH686_21830 0.53 +0.9
4,446,661 + OH686_21830 0.53 -0.6
4,446,662 - OH686_21830 0.53 -0.2
4,446,693 + OH686_21830 0.58 -0.1
4,446,693 + OH686_21830 0.58 -0.4
4,446,694 - OH686_21830 0.58 -0.0
4,446,694 - OH686_21830 0.58 -0.6
4,447,077 + +0.2
4,447,078 - -0.4
4,447,078 - -0.1
4,447,078 - +0.3
4,447,078 - -0.6
4,447,078 - -0.2
4,447,078 - +0.5
4,447,078 - +0.1
4,447,078 - -0.8
4,447,078 - -0.1
4,447,078 - -0.0
4,447,090 + -0.2
4,447,091 - -1.3
4,447,091 - +0.2
4,447,105 + -1.3
4,447,105 + -0.2
4,447,105 + +0.4
4,447,105 + -0.1
4,447,106 - -0.5
4,447,106 - +0.4
4,447,106 - +0.4
4,447,109 + -0.1
4,447,110 - -0.0
4,447,110 - +0.4
4,447,110 - -0.6
4,447,150 + -0.2
4,447,150 + +1.4
4,447,150 + +0.1
4,447,150 + +0.4
4,447,150 + +0.2
4,447,150 + +0.3
4,447,151 - -0.6
4,447,151 - -1.2
4,447,151 - +0.4
4,447,151 - -0.5
4,447,151 - -0.4
4,447,401 + OH686_21840 0.23 -0.6
4,447,401 + OH686_21840 0.23 -0.8
4,447,401 + OH686_21840 0.23 -0.3
4,447,401 + OH686_21840 0.23 -0.1
4,447,401 + OH686_21840 0.23 +0.7
4,447,401 + OH686_21840 0.23 +0.3
4,447,401 + OH686_21840 0.23 -0.8
4,447,401 + OH686_21840 0.23 -0.4
4,447,401 + OH686_21840 0.23 +0.3
4,447,401 + OH686_21840 0.23 -0.8
4,447,401 + OH686_21840 0.23 +0.5
4,447,401 + OH686_21840 0.23 -0.2
4,447,402 - OH686_21840 0.23 -0.8
4,447,402 - OH686_21840 0.23 +0.9
4,447,402 - OH686_21840 0.23 -1.0
4,447,402 - OH686_21840 0.23 -0.6
4,447,402 - OH686_21840 0.23 +0.8
4,447,402 - OH686_21840 0.23 +0.5
4,447,402 - OH686_21840 0.23 +1.2
4,447,402 - OH686_21840 0.23 -1.0
4,447,402 - OH686_21840 0.23 -0.1
4,447,402 - OH686_21840 0.23 -1.1
4,447,402 - OH686_21840 0.23 -1.6
4,447,402 - OH686_21840 0.23 -0.7
4,447,402 - OH686_21840 0.23 +0.5
4,447,459 + OH686_21840 0.28 +1.4
4,447,459 + OH686_21840 0.28 +0.7
4,447,459 + OH686_21840 0.28 +0.5
4,447,459 + OH686_21840 0.28 +0.1
4,447,460 - OH686_21840 0.28 -0.4
4,447,460 - OH686_21840 0.28 -0.8
4,447,460 - OH686_21840 0.28 +0.0
4,447,460 - OH686_21840 0.28 -1.1
4,447,507 - OH686_21840 0.33 -0.2
4,447,961 + OH686_21840 0.75 -0.4
4,448,006 + OH686_21840 0.79 -0.8
4,448,007 - OH686_21840 0.79 -0.1
4,448,079 + OH686_21840 0.86 -0.5
4,448,079 + OH686_21840 0.86 -0.5
4,448,079 + OH686_21840 0.86 +0.3
4,448,079 + OH686_21840 0.86 +0.5
4,448,080 - OH686_21840 0.86 +0.2
4,448,387 + OH686_21845 0.19 -0.4
4,448,387 + OH686_21845 0.19 +0.4
4,448,388 - OH686_21845 0.19 -0.2
4,448,388 - OH686_21845 0.19 +0.6
4,448,588 + OH686_21845 0.43 -0.3
4,448,588 + OH686_21845 0.43 +0.1
4,448,588 + OH686_21845 0.43 +2.7
4,448,588 + OH686_21845 0.43 -0.3
4,448,588 + OH686_21845 0.43 +0.1
4,448,588 + OH686_21845 0.43 +0.2
4,448,588 + OH686_21845 0.43 +1.1
4,448,589 - OH686_21845 0.44 +0.5
4,448,589 - OH686_21845 0.44 -0.8
4,448,693 + OH686_21845 0.56 +0.9
4,448,693 + OH686_21845 0.56 -1.1
4,448,693 + OH686_21845 0.56 +0.3
4,448,694 - OH686_21845 0.57 -0.0
4,448,694 - OH686_21845 0.57 -1.5
4,448,694 - OH686_21845 0.57 -0.3
4,448,694 - OH686_21845 0.57 -1.1
4,448,694 - OH686_21845 0.57 -0.4
4,448,801 + OH686_21845 0.70 +0.5
4,448,801 + OH686_21845 0.70 +0.6
4,448,802 - OH686_21845 0.70 +1.2
4,448,802 - OH686_21845 0.70 +0.2
4,448,802 - OH686_21845 0.70 -0.0
4,448,802 - OH686_21845 0.70 +0.6
4,448,802 - OH686_21845 0.70 +1.1
4,448,802 - OH686_21845 0.70 -0.3
4,448,879 + OH686_21845 0.79 +0.4
4,448,879 + OH686_21845 0.79 +0.8
4,448,880 - OH686_21845 0.80 +0.4
4,448,880 - OH686_21845 0.80 +0.1
4,448,885 + OH686_21845 0.80 +0.9
4,448,885 + OH686_21845 0.80 -0.4
4,448,885 + OH686_21845 0.80 -0.2
4,448,886 - OH686_21845 0.80 +0.2
4,448,886 - OH686_21845 0.80 -0.1
4,448,886 - OH686_21845 0.80 -2.0
4,448,886 - OH686_21845 0.80 -0.1
4,448,886 - OH686_21845 0.80 +1.3
4,448,886 - OH686_21845 0.80 +0.0
4,448,886 - OH686_21845 0.80 +0.1
4,449,000 - -0.4
4,449,116 + OH686_21850 0.14 +0.1
4,449,116 + OH686_21850 0.14 +0.6
4,449,120 - OH686_21850 0.14 -0.6
4,449,120 - OH686_21850 0.14 +0.6

Or see this region's nucleotide sequence