Strain Fitness in Pseudomonas sp. S08-1 around OH686_16685

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_16670 and OH686_16675 are separated by 16 nucleotidesOH686_16675 and OH686_16680 overlap by 8 nucleotidesOH686_16680 and OH686_16685 overlap by 4 nucleotidesOH686_16685 and OH686_16690 are separated by 152 nucleotidesOH686_16690 and OH686_16695 are separated by 142 nucleotides OH686_16670: OH686_16670 - urease accessory protein UreG, at 3,485,934 to 3,486,548 _16670 OH686_16675: OH686_16675 - Urease accessory protein UreF, at 3,486,565 to 3,487,239 _16675 OH686_16680: OH686_16680 - CDS, at 3,487,232 to 3,487,351 _16680 OH686_16685: OH686_16685 - Urease accessory protein UreE, at 3,487,348 to 3,487,848 _16685 OH686_16690: OH686_16690 - Transcriptional regulator, AcrR family, at 3,488,001 to 3,488,636 _16690 OH686_16695: OH686_16695 - Flavodoxin (ferredoxin-NADPH reductases) family 1, at 3,488,779 to 3,489,867 _16695 Position (kb) 3487 3488Strain fitness (log2 ratio) -2 -1 0 1at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.421 kb on + strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.422 kb on - strand, within OH686_16670at 3486.451 kb on + strand, within OH686_16670at 3486.451 kb on + strand, within OH686_16670at 3486.451 kb on + strand, within OH686_16670at 3486.451 kb on + strand, within OH686_16670at 3486.451 kb on + strand, within OH686_16670at 3486.451 kb on + strand, within OH686_16670at 3486.451 kb on + strand, within OH686_16670at 3486.451 kb on + strand, within OH686_16670at 3486.451 kb on + strand, within OH686_16670at 3486.452 kb on - strand, within OH686_16670at 3486.452 kb on - strand, within OH686_16670at 3486.452 kb on - strand, within OH686_16670at 3486.587 kb on + strandat 3486.587 kb on + strandat 3486.588 kb on - strandat 3486.588 kb on - strandat 3486.588 kb on - strandat 3486.588 kb on - strandat 3486.588 kb on - strandat 3486.588 kb on - strandat 3486.588 kb on - strandat 3486.938 kb on + strand, within OH686_16675at 3486.939 kb on - strand, within OH686_16675at 3487.175 kb on + strandat 3487.175 kb on + strandat 3487.175 kb on + strandat 3487.175 kb on + strandat 3487.175 kb on + strandat 3487.175 kb on + strandat 3487.175 kb on + strandat 3487.175 kb on + strandat 3487.176 kb on - strandat 3487.176 kb on - strandat 3487.176 kb on - strandat 3487.176 kb on - strandat 3487.176 kb on - strandat 3487.176 kb on - strandat 3487.176 kb on - strandat 3487.176 kb on - strandat 3487.181 kb on + strandat 3487.233 kb on + strandat 3487.233 kb on + strandat 3487.233 kb on + strandat 3487.233 kb on + strandat 3487.233 kb on + strandat 3487.233 kb on + strandat 3487.385 kb on + strandat 3487.386 kb on - strandat 3487.434 kb on - strand, within OH686_16685at 3487.514 kb on + strand, within OH686_16685at 3487.514 kb on + strand, within OH686_16685at 3487.514 kb on + strand, within OH686_16685at 3487.514 kb on + strand, within OH686_16685at 3487.514 kb on + strand, within OH686_16685at 3487.514 kb on + strand, within OH686_16685at 3487.515 kb on - strand, within OH686_16685at 3487.515 kb on - strand, within OH686_16685at 3487.515 kb on - strand, within OH686_16685at 3487.515 kb on - strand, within OH686_16685at 3487.515 kb on - strand, within OH686_16685at 3487.580 kb on + strand, within OH686_16685at 3487.581 kb on - strand, within OH686_16685at 3487.654 kb on + strand, within OH686_16685at 3487.655 kb on - strand, within OH686_16685at 3487.773 kb on + strand, within OH686_16685at 3487.812 kb on - strandat 3487.882 kb on - strandat 3487.928 kb on + strandat 3487.929 kb on - strandat 3487.929 kb on - strandat 3487.929 kb on - strandat 3487.929 kb on - strandat 3488.002 kb on + strandat 3488.003 kb on - strandat 3488.003 kb on - strandat 3488.400 kb on - strand, within OH686_16690at 3488.400 kb on - strand, within OH686_16690at 3488.400 kb on - strand, within OH686_16690at 3488.420 kb on + strand, within OH686_16690at 3488.421 kb on - strand, within OH686_16690at 3488.491 kb on + strand, within OH686_16690at 3488.492 kb on - strand, within OH686_16690at 3488.671 kb on + strandat 3488.671 kb on + strandat 3488.672 kb on - strandat 3488.672 kb on - strandat 3488.672 kb on - strandat 3488.672 kb on - strandat 3488.672 kb on - strandat 3488.672 kb on - strandat 3488.771 kb on - strandat 3488.825 kb on + strandat 3488.825 kb on + strandat 3488.825 kb on + strandat 3488.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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3,486,421 + OH686_16670 0.79 +0.3
3,486,421 + OH686_16670 0.79 -0.0
3,486,421 + OH686_16670 0.79 +0.5
3,486,421 + OH686_16670 0.79 -1.0
3,486,421 + OH686_16670 0.79 -0.2
3,486,421 + OH686_16670 0.79 +0.4
3,486,421 + OH686_16670 0.79 +1.2
3,486,421 + OH686_16670 0.79 -1.2
3,486,421 + OH686_16670 0.79 -0.6
3,486,421 + OH686_16670 0.79 -0.0
3,486,421 + OH686_16670 0.79 -0.3
3,486,421 + OH686_16670 0.79 -1.2
3,486,421 + OH686_16670 0.79 -0.0
3,486,421 + OH686_16670 0.79 +0.4
3,486,421 + OH686_16670 0.79 -0.5
3,486,421 + OH686_16670 0.79 +1.4
3,486,421 + OH686_16670 0.79 -0.2
3,486,421 + OH686_16670 0.79 +0.8
3,486,421 + OH686_16670 0.79 +0.9
3,486,421 + OH686_16670 0.79 +0.8
3,486,421 + OH686_16670 0.79 +0.2
3,486,421 + OH686_16670 0.79 -0.1
3,486,421 + OH686_16670 0.79 +0.8
3,486,421 + OH686_16670 0.79 +0.7
3,486,421 + OH686_16670 0.79 +0.6
3,486,421 + OH686_16670 0.79 -0.2
3,486,421 + OH686_16670 0.79 +0.6
3,486,421 + OH686_16670 0.79 +0.0
3,486,422 - OH686_16670 0.79 +0.1
3,486,422 - OH686_16670 0.79 -0.0
3,486,422 - OH686_16670 0.79 +0.1
3,486,422 - OH686_16670 0.79 +0.1
3,486,422 - OH686_16670 0.79 -0.4
3,486,422 - OH686_16670 0.79 +0.1
3,486,422 - OH686_16670 0.79 +0.0
3,486,422 - OH686_16670 0.79 -0.1
3,486,422 - OH686_16670 0.79 -0.5
3,486,422 - OH686_16670 0.79 +0.6
3,486,422 - OH686_16670 0.79 +0.1
3,486,422 - OH686_16670 0.79 +0.4
3,486,422 - OH686_16670 0.79 -0.3
3,486,422 - OH686_16670 0.79 +0.6
3,486,422 - OH686_16670 0.79 -0.5
3,486,422 - OH686_16670 0.79 +0.1
3,486,422 - OH686_16670 0.79 +0.3
3,486,422 - OH686_16670 0.79 -0.8
3,486,422 - OH686_16670 0.79 -0.8
3,486,451 + OH686_16670 0.84 -1.0
3,486,451 + OH686_16670 0.84 -1.1
3,486,451 + OH686_16670 0.84 +0.2
3,486,451 + OH686_16670 0.84 +0.2
3,486,451 + OH686_16670 0.84 +0.1
3,486,451 + OH686_16670 0.84 -0.1
3,486,451 + OH686_16670 0.84 -0.8
3,486,451 + OH686_16670 0.84 -1.0
3,486,451 + OH686_16670 0.84 -0.1
3,486,452 - OH686_16670 0.84 -0.8
3,486,452 - OH686_16670 0.84 +0.3
3,486,452 - OH686_16670 0.84 +0.1
3,486,587 + -0.1
3,486,587 + +0.6
3,486,588 - -0.1
3,486,588 - -0.3
3,486,588 - -1.4
3,486,588 - +0.1
3,486,588 - -0.2
3,486,588 - +1.5
3,486,588 - +0.5
3,486,938 + OH686_16675 0.55 -0.3
3,486,939 - OH686_16675 0.55 -0.2
3,487,175 + +0.0
3,487,175 + -0.9
3,487,175 + -0.9
3,487,175 + +0.9
3,487,175 + -0.0
3,487,175 + -0.8
3,487,175 + -0.3
3,487,175 + +0.7
3,487,176 - -0.4
3,487,176 - +0.4
3,487,176 - +1.0
3,487,176 - +0.5
3,487,176 - +0.5
3,487,176 - -0.8
3,487,176 - -0.4
3,487,176 - +0.5
3,487,181 + +0.3
3,487,233 + -0.7
3,487,233 + +0.6
3,487,233 + -0.6
3,487,233 + -0.0
3,487,233 + -0.2
3,487,233 + +0.9
3,487,385 + -0.3
3,487,386 - -1.3
3,487,434 - OH686_16685 0.17 +0.4
3,487,514 + OH686_16685 0.33 +0.5
3,487,514 + OH686_16685 0.33 +0.4
3,487,514 + OH686_16685 0.33 -0.1
3,487,514 + OH686_16685 0.33 +1.2
3,487,514 + OH686_16685 0.33 -0.2
3,487,514 + OH686_16685 0.33 -0.8
3,487,515 - OH686_16685 0.33 +0.5
3,487,515 - OH686_16685 0.33 -0.8
3,487,515 - OH686_16685 0.33 +0.3
3,487,515 - OH686_16685 0.33 -0.1
3,487,515 - OH686_16685 0.33 +1.5
3,487,580 + OH686_16685 0.46 -0.7
3,487,581 - OH686_16685 0.47 +0.3
3,487,654 + OH686_16685 0.61 +0.6
3,487,655 - OH686_16685 0.61 -0.9
3,487,773 + OH686_16685 0.85 -0.2
3,487,812 - +0.0
3,487,882 - -0.4
3,487,928 + +0.2
3,487,929 - +0.3
3,487,929 - +0.1
3,487,929 - -0.1
3,487,929 - -0.6
3,488,002 + -0.0
3,488,003 - -0.4
3,488,003 - +0.5
3,488,400 - OH686_16690 0.63 -0.6
3,488,400 - OH686_16690 0.63 -0.0
3,488,400 - OH686_16690 0.63 -0.7
3,488,420 + OH686_16690 0.66 -0.9
3,488,421 - OH686_16690 0.66 +0.2
3,488,491 + OH686_16690 0.77 -1.8
3,488,492 - OH686_16690 0.77 -0.5
3,488,671 + +0.1
3,488,671 + -0.9
3,488,672 - +0.1
3,488,672 - +1.3
3,488,672 - -0.5
3,488,672 - +0.0
3,488,672 - +0.7
3,488,672 - -0.5
3,488,771 - -0.7
3,488,825 + +0.6
3,488,825 + -0.2
3,488,825 + -0.2
3,488,826 - -0.7

Or see this region's nucleotide sequence