Strain Fitness in Pseudomonas sp. S08-1 around OH686_06485

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_06480 and OH686_06485 are separated by 123 nucleotidesOH686_06485 and OH686_06490 are separated by 261 nucleotides OH686_06480: OH686_06480 - translation elongation factor Ts, at 1,315,762 to 1,316,625 _06480 OH686_06485: OH686_06485 - ribosomal protein S2, at 1,316,749 to 1,317,489 _06485 OH686_06490: OH686_06490 - methionine aminopeptidase, type I, at 1,317,751 to 1,318,551 _06490 Position (kb) 1316 1317 1318Strain fitness (log2 ratio) -1 0 1at 1315.763 kb on + strandat 1315.763 kb on + strandat 1315.763 kb on + strandat 1315.764 kb on - strandat 1315.764 kb on - strandat 1316.691 kb on - strandat 1316.711 kb on - strandat 1317.592 kb on - strandat 1317.696 kb on + strandat 1317.720 kb on - strandat 1317.720 kb on - strandat 1317.720 kb on - strandat 1317.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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1,315,763 + +0.3
1,315,763 + -0.1
1,315,763 + -0.6
1,315,764 - +1.7
1,315,764 - -0.9
1,316,691 - +0.4
1,316,711 - +0.7
1,317,592 - +0.7
1,317,696 + +0.7
1,317,720 - -0.4
1,317,720 - +0.2
1,317,720 - -0.3
1,317,720 - +0.4

Or see this region's nucleotide sequence