Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4439

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4438 and EX28DRAFT_4439 are separated by 65 nucleotidesEX28DRAFT_4439 and EX28DRAFT_4440 are separated by 385 nucleotides EX28DRAFT_4438: EX28DRAFT_4438 - Mg chelatase-related protein, at 1,811 to 3,331 _4438 EX28DRAFT_4439: EX28DRAFT_4439 - hypothetical protein, at 3,397 to 3,525 _4439 EX28DRAFT_4440: EX28DRAFT_4440 - acetolactate synthase, large subunit (EC 2.2.1.6), at 3,911 to 5,557 _4440 Position (kb) 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2.584 kb on + strand, within EX28DRAFT_4438at 2.584 kb on + strand, within EX28DRAFT_4438at 2.584 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.587 kb on - strand, within EX28DRAFT_4438at 2.587 kb on - strand, within EX28DRAFT_4438at 2.587 kb on - strand, within EX28DRAFT_4438at 2.588 kb on + strand, within EX28DRAFT_4438at 2.589 kb on - strand, within EX28DRAFT_4438at 2.642 kb on + strand, within EX28DRAFT_4438at 2.642 kb on + strand, within EX28DRAFT_4438at 2.687 kb on + strand, within EX28DRAFT_4438at 2.688 kb on - strand, within EX28DRAFT_4438at 2.785 kb on + strand, within EX28DRAFT_4438at 2.785 kb on + strand, within EX28DRAFT_4438at 2.785 kb on + strand, within EX28DRAFT_4438at 2.785 kb on + strand, within EX28DRAFT_4438at 2.786 kb on - strand, within EX28DRAFT_4438at 2.786 kb on - strand, within EX28DRAFT_4438at 2.853 kb on - strand, within EX28DRAFT_4438at 2.943 kb on - strand, within EX28DRAFT_4438at 3.041 kb on - strand, within EX28DRAFT_4438at 3.084 kb on - strand, within EX28DRAFT_4438at 3.158 kb on - strand, within EX28DRAFT_4438at 3.158 kb on - strand, within EX28DRAFT_4438at 3.159 kb on + strand, within EX28DRAFT_4438at 3.166 kb on + strand, within EX28DRAFT_4438at 3.170 kb on + strand, within EX28DRAFT_4438at 3.170 kb on + strand, within EX28DRAFT_4438at 3.171 kb on - strand, within EX28DRAFT_4438at 3.171 kb on - strand, within EX28DRAFT_4438at 3.171 kb on - strand, within EX28DRAFT_4438at 3.253 kb on + strandat 3.258 kb on - strandat 3.258 kb on - strandat 3.492 kb on + strand, within EX28DRAFT_4439at 3.541 kb on + strandat 3.593 kb on + strandat 3.593 kb on + strandat 3.594 kb on - strandat 3.639 kb on + strandat 3.687 kb on - strandat 3.730 kb on - strandat 3.826 kb on + strandat 3.931 kb on - strandat 3.933 kb on + strandat 3.933 kb on + strandat 3.934 kb on - strandat 3.934 kb on - strandat 3.991 kb on + strandat 4.002 kb on - strandat 4.014 kb on - strandat 4.079 kb on + strand, within EX28DRAFT_4440at 4.080 kb on - strand, within EX28DRAFT_4440at 4.390 kb on + strand, within EX28DRAFT_4440at 4.391 kb on - strand, within EX28DRAFT_4440

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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2,584 + EX28DRAFT_4438 0.51 +0.6
2,584 + EX28DRAFT_4438 0.51 +2.0
2,584 + EX28DRAFT_4438 0.51 +0.8
2,586 + EX28DRAFT_4438 0.51 +3.2
2,586 + EX28DRAFT_4438 0.51 +0.7
2,586 + EX28DRAFT_4438 0.51 +1.2
2,586 + EX28DRAFT_4438 0.51 -2.5
2,586 + EX28DRAFT_4438 0.51 +0.6
2,587 - EX28DRAFT_4438 0.51 -1.0
2,587 - EX28DRAFT_4438 0.51 -2.5
2,587 - EX28DRAFT_4438 0.51 -3.4
2,588 + EX28DRAFT_4438 0.51 +0.6
2,589 - EX28DRAFT_4438 0.51 -1.5
2,642 + EX28DRAFT_4438 0.55 +4.6
2,642 + EX28DRAFT_4438 0.55 +1.5
2,687 + EX28DRAFT_4438 0.58 +1.1
2,688 - EX28DRAFT_4438 0.58 +1.2
2,785 + EX28DRAFT_4438 0.64 +0.5
2,785 + EX28DRAFT_4438 0.64 +0.4
2,785 + EX28DRAFT_4438 0.64 -1.8
2,785 + EX28DRAFT_4438 0.64 -0.5
2,786 - EX28DRAFT_4438 0.64 +0.5
2,786 - EX28DRAFT_4438 0.64 +1.2
2,853 - EX28DRAFT_4438 0.69 -2.7
2,943 - EX28DRAFT_4438 0.74 +1.4
3,041 - EX28DRAFT_4438 0.81 -0.4
3,084 - EX28DRAFT_4438 0.84 +1.6
3,158 - EX28DRAFT_4438 0.89 +0.9
3,158 - EX28DRAFT_4438 0.89 +1.6
3,159 + EX28DRAFT_4438 0.89 +3.4
3,166 + EX28DRAFT_4438 0.89 -0.1
3,170 + EX28DRAFT_4438 0.89 +0.2
3,170 + EX28DRAFT_4438 0.89 +0.2
3,171 - EX28DRAFT_4438 0.89 +0.7
3,171 - EX28DRAFT_4438 0.89 +0.8
3,171 - EX28DRAFT_4438 0.89 -1.9
3,253 + -1.8
3,258 - -1.4
3,258 - +0.6
3,492 + EX28DRAFT_4439 0.74 -2.4
3,541 + -2.9
3,593 + -1.6
3,593 + -1.1
3,594 - -2.1
3,639 + -0.0
3,687 - -1.5
3,730 - -0.5
3,826 + +0.3
3,931 - -0.6
3,933 + +1.2
3,933 + +0.1
3,934 - -0.3
3,934 - +0.8
3,991 + +0.4
4,002 - -2.9
4,014 - +0.4
4,079 + EX28DRAFT_4440 0.10 +0.9
4,080 - EX28DRAFT_4440 0.10 +1.1
4,390 + EX28DRAFT_4440 0.29 -0.0
4,391 - EX28DRAFT_4440 0.29 -0.6

Or see this region's nucleotide sequence