Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4396

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4394 and EX28DRAFT_4395 are separated by 111 nucleotidesEX28DRAFT_4395 and EX28DRAFT_4396 are separated by 112 nucleotidesEX28DRAFT_4396 and EX28DRAFT_4397 are separated by 0 nucleotidesEX28DRAFT_4397 and EX28DRAFT_4398 are separated by 96 nucleotides EX28DRAFT_4394: EX28DRAFT_4394 - triosephosphate isomerase (EC 5.3.1.1), at 57,503 to 58,270 _4394 EX28DRAFT_4395: EX28DRAFT_4395 - Protein of unknown function (DUF1454), at 58,382 to 58,978 _4395 EX28DRAFT_4396: EX28DRAFT_4396 - Predicted membrane protein, at 59,091 to 59,510 _4396 EX28DRAFT_4397: EX28DRAFT_4397 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 59,511 to 60,257 _4397 EX28DRAFT_4398: EX28DRAFT_4398 - fructose-1,6-bisphosphatase, class II, at 60,354 to 61,364 _4398 Position (kb) 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 58.409 kb on + strandat 58.501 kb on - strand, within EX28DRAFT_4395at 58.501 kb on - strand, within EX28DRAFT_4395at 58.576 kb on + strand, within EX28DRAFT_4395at 58.602 kb on + strand, within EX28DRAFT_4395at 58.603 kb on - strand, within EX28DRAFT_4395at 58.603 kb on - strand, within EX28DRAFT_4395at 58.706 kb on - strand, within EX28DRAFT_4395at 59.012 kb on - strandat 59.070 kb on + strandat 59.070 kb on + strandat 59.071 kb on - strandat 59.078 kb on + strandat 59.078 kb on + strandat 59.078 kb on + strandat 59.088 kb on + strandat 59.088 kb on + strandat 59.088 kb on + strandat 59.088 kb on + strandat 59.088 kb on + strandat 59.088 kb on + strandat 59.088 kb on + strandat 59.089 kb on - strandat 59.089 kb on - strandat 59.089 kb on - strandat 59.089 kb on - strandat 59.098 kb on + strandat 59.098 kb on + strandat 59.098 kb on + strandat 59.099 kb on - strandat 59.099 kb on - strandat 59.202 kb on + strand, within EX28DRAFT_4396at 59.202 kb on + strand, within EX28DRAFT_4396at 59.203 kb on - strand, within EX28DRAFT_4396at 59.203 kb on - strand, within EX28DRAFT_4396at 59.278 kb on + strand, within EX28DRAFT_4396at 59.327 kb on + strand, within EX28DRAFT_4396at 59.328 kb on - strand, within EX28DRAFT_4396at 59.476 kb on - strandat 59.519 kb on - strandat 59.535 kb on - strandat 59.694 kb on + strand, within EX28DRAFT_4397at 59.807 kb on - strand, within EX28DRAFT_4397at 59.807 kb on - strand, within EX28DRAFT_4397at 59.889 kb on - strand, within EX28DRAFT_4397at 59.896 kb on + strand, within EX28DRAFT_4397at 59.897 kb on - strand, within EX28DRAFT_4397at 60.061 kb on + strand, within EX28DRAFT_4397at 60.061 kb on + strand, within EX28DRAFT_4397at 60.062 kb on - strand, within EX28DRAFT_4397at 60.097 kb on + strand, within EX28DRAFT_4397at 60.186 kb on + strandat 60.186 kb on + strandat 60.187 kb on - strandat 60.187 kb on - strandat 60.197 kb on + strandat 60.197 kb on + strandat 60.198 kb on - strandat 60.198 kb on - strandat 60.222 kb on + strandat 60.286 kb on + strandat 60.286 kb on + strandat 60.287 kb on - strandat 60.295 kb on + strandat 60.296 kb on - strandat 60.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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58,409 + +0.2
58,501 - EX28DRAFT_4395 0.20 -1.8
58,501 - EX28DRAFT_4395 0.20 -0.1
58,576 + EX28DRAFT_4395 0.32 -0.7
58,602 + EX28DRAFT_4395 0.37 -1.1
58,603 - EX28DRAFT_4395 0.37 -0.9
58,603 - EX28DRAFT_4395 0.37 -2.1
58,706 - EX28DRAFT_4395 0.54 -1.0
59,012 - -1.0
59,070 + -0.1
59,070 + +0.5
59,071 - -1.0
59,078 + +2.7
59,078 + +0.8
59,078 + +0.3
59,088 + -2.1
59,088 + +0.3
59,088 + -0.0
59,088 + +2.3
59,088 + +0.7
59,088 + -2.0
59,088 + -0.2
59,089 - +0.3
59,089 - +0.0
59,089 - -1.3
59,089 - -3.1
59,098 + -1.0
59,098 + +0.6
59,098 + -0.4
59,099 - +1.3
59,099 - +2.4
59,202 + EX28DRAFT_4396 0.26 -0.6
59,202 + EX28DRAFT_4396 0.26 +0.2
59,203 - EX28DRAFT_4396 0.27 +1.0
59,203 - EX28DRAFT_4396 0.27 +0.8
59,278 + EX28DRAFT_4396 0.45 +0.9
59,327 + EX28DRAFT_4396 0.56 +0.1
59,328 - EX28DRAFT_4396 0.56 +1.3
59,476 - +0.7
59,519 - +3.2
59,535 - +0.3
59,694 + EX28DRAFT_4397 0.24 -0.3
59,807 - EX28DRAFT_4397 0.40 -0.5
59,807 - EX28DRAFT_4397 0.40 +0.4
59,889 - EX28DRAFT_4397 0.51 +2.6
59,896 + EX28DRAFT_4397 0.52 +2.1
59,897 - EX28DRAFT_4397 0.52 +0.7
60,061 + EX28DRAFT_4397 0.74 -0.3
60,061 + EX28DRAFT_4397 0.74 -2.3
60,062 - EX28DRAFT_4397 0.74 -0.2
60,097 + EX28DRAFT_4397 0.78 -0.2
60,186 + +0.7
60,186 + -1.2
60,187 - +2.4
60,187 - +4.2
60,197 + +0.6
60,197 + -0.2
60,198 - +1.7
60,198 - +1.7
60,222 + +1.7
60,286 + +1.4
60,286 + +0.5
60,287 - -2.1
60,295 + -2.9
60,296 - -0.8
60,398 - +0.5

Or see this region's nucleotide sequence