Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4386

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4384 and EX28DRAFT_4385 are separated by 71 nucleotidesEX28DRAFT_4385 and EX28DRAFT_4386 are separated by 102 nucleotidesEX28DRAFT_4386 and EX28DRAFT_4387 overlap by 4 nucleotidesEX28DRAFT_4387 and EX28DRAFT_4388 are separated by 150 nucleotides EX28DRAFT_4384: EX28DRAFT_4384 - Superoxide dismutase, at 47,626 to 48,246 _4384 EX28DRAFT_4385: EX28DRAFT_4385 - Uncharacterized protein conserved in bacteria, at 48,318 to 48,992 _4385 EX28DRAFT_4386: EX28DRAFT_4386 - Signal transduction histidine kinase, at 49,095 to 50,468 _4386 EX28DRAFT_4387: EX28DRAFT_4387 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 50,465 to 51,163 _4387 EX28DRAFT_4388: EX28DRAFT_4388 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 51,314 to 51,820 _4388 Position (kb) 49 50 51Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 48.145 kb on + strand, within EX28DRAFT_4384at 48.148 kb on + strand, within EX28DRAFT_4384at 48.178 kb on + strand, within EX28DRAFT_4384at 48.179 kb on - strand, within EX28DRAFT_4384at 48.245 kb on - strandat 48.278 kb on + strandat 48.296 kb on + strandat 48.510 kb on + strand, within EX28DRAFT_4385at 48.614 kb on + strand, within EX28DRAFT_4385at 48.623 kb on + strand, within EX28DRAFT_4385at 48.627 kb on + strand, within EX28DRAFT_4385at 48.628 kb on - strand, within EX28DRAFT_4385at 48.690 kb on + strand, within EX28DRAFT_4385at 48.690 kb on + strand, within EX28DRAFT_4385at 48.690 kb on + strand, within EX28DRAFT_4385at 48.710 kb on + strand, within EX28DRAFT_4385at 48.710 kb on + strand, within EX28DRAFT_4385at 48.711 kb on - strand, within EX28DRAFT_4385at 48.711 kb on - strand, within EX28DRAFT_4385at 48.753 kb on + strand, within EX28DRAFT_4385at 48.858 kb on - strand, within EX28DRAFT_4385at 48.858 kb on - strand, within EX28DRAFT_4385at 48.879 kb on + strand, within EX28DRAFT_4385at 48.946 kb on + strandat 48.965 kb on + strandat 49.079 kb on + strandat 49.108 kb on + strandat 49.108 kb on + strandat 49.108 kb on + strandat 49.108 kb on + strandat 49.108 kb on + strandat 49.109 kb on - strandat 49.259 kb on - strand, within EX28DRAFT_4386at 49.438 kb on + strand, within EX28DRAFT_4386at 49.439 kb on - strand, within EX28DRAFT_4386at 50.275 kb on - strand, within EX28DRAFT_4386at 50.398 kb on - strandat 50.667 kb on + strand, within EX28DRAFT_4387at 50.667 kb on + strand, within EX28DRAFT_4387at 50.668 kb on - strand, within EX28DRAFT_4387at 50.767 kb on + strand, within EX28DRAFT_4387at 50.768 kb on - strand, within EX28DRAFT_4387at 50.980 kb on + strand, within EX28DRAFT_4387at 50.981 kb on - strand, within EX28DRAFT_4387at 51.157 kb on + strandat 51.168 kb on + strandat 51.168 kb on + strandat 51.168 kb on + strandat 51.169 kb on - strandat 51.209 kb on - strandat 51.222 kb on - strandat 51.231 kb on + strandat 51.231 kb on + strandat 51.232 kb on - strandat 51.265 kb on + strandat 51.265 kb on + strandat 51.266 kb on - strandat 51.385 kb on + strand, within EX28DRAFT_4388at 51.408 kb on + strand, within EX28DRAFT_4388at 51.409 kb on - strand, within EX28DRAFT_4388at 51.445 kb on + strand, within EX28DRAFT_4388at 51.445 kb on + strand, within EX28DRAFT_4388at 51.446 kb on - strand, within EX28DRAFT_4388at 51.446 kb on - strand, within EX28DRAFT_4388at 51.460 kb on - strand, within EX28DRAFT_4388

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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48,145 + EX28DRAFT_4384 0.84 +0.3
48,148 + EX28DRAFT_4384 0.84 -2.7
48,178 + EX28DRAFT_4384 0.89 +0.4
48,179 - EX28DRAFT_4384 0.89 -1.4
48,245 - -1.7
48,278 + +1.4
48,296 + +0.6
48,510 + EX28DRAFT_4385 0.28 +1.1
48,614 + EX28DRAFT_4385 0.44 +0.4
48,623 + EX28DRAFT_4385 0.45 -0.3
48,627 + EX28DRAFT_4385 0.46 -3.5
48,628 - EX28DRAFT_4385 0.46 +1.2
48,690 + EX28DRAFT_4385 0.55 +0.5
48,690 + EX28DRAFT_4385 0.55 -0.0
48,690 + EX28DRAFT_4385 0.55 +4.6
48,710 + EX28DRAFT_4385 0.58 +0.3
48,710 + EX28DRAFT_4385 0.58 +5.1
48,711 - EX28DRAFT_4385 0.58 +0.1
48,711 - EX28DRAFT_4385 0.58 -1.0
48,753 + EX28DRAFT_4385 0.64 +1.0
48,858 - EX28DRAFT_4385 0.80 +1.2
48,858 - EX28DRAFT_4385 0.80 -1.5
48,879 + EX28DRAFT_4385 0.83 +1.1
48,946 + -1.8
48,965 + +1.3
49,079 + -1.2
49,108 + +0.8
49,108 + +2.4
49,108 + +0.5
49,108 + +2.1
49,108 + -0.2
49,109 - +1.4
49,259 - EX28DRAFT_4386 0.12 -2.4
49,438 + EX28DRAFT_4386 0.25 -0.4
49,439 - EX28DRAFT_4386 0.25 -4.5
50,275 - EX28DRAFT_4386 0.86 -1.4
50,398 - -2.6
50,667 + EX28DRAFT_4387 0.29 -4.2
50,667 + EX28DRAFT_4387 0.29 +1.2
50,668 - EX28DRAFT_4387 0.29 +0.3
50,767 + EX28DRAFT_4387 0.43 +0.3
50,768 - EX28DRAFT_4387 0.43 +1.7
50,980 + EX28DRAFT_4387 0.74 +0.5
50,981 - EX28DRAFT_4387 0.74 -1.3
51,157 + -0.5
51,168 + -0.6
51,168 + -0.2
51,168 + -0.7
51,169 - +2.2
51,209 - +0.7
51,222 - +0.7
51,231 + +0.2
51,231 + -0.2
51,232 - +2.2
51,265 + -0.6
51,265 + -1.8
51,266 - +0.1
51,385 + EX28DRAFT_4388 0.14 -0.3
51,408 + EX28DRAFT_4388 0.19 -0.0
51,409 - EX28DRAFT_4388 0.19 -0.0
51,445 + EX28DRAFT_4388 0.26 -1.7
51,445 + EX28DRAFT_4388 0.26 +1.1
51,446 - EX28DRAFT_4388 0.26 +1.1
51,446 - EX28DRAFT_4388 0.26 +0.6
51,460 - EX28DRAFT_4388 0.29 -1.0

Or see this region's nucleotide sequence