Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4246

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4244 and EX28DRAFT_4245 are separated by 61 nucleotidesEX28DRAFT_4245 and EX28DRAFT_4246 are separated by 250 nucleotidesEX28DRAFT_4246 and EX28DRAFT_4247 are separated by 3 nucleotidesEX28DRAFT_4247 and EX28DRAFT_4248 are separated by 2 nucleotidesEX28DRAFT_4248 and EX28DRAFT_4249 are separated by 113 nucleotides EX28DRAFT_4244: EX28DRAFT_4244 - hypothetical protein, at 51,458 to 51,739 _4244 EX28DRAFT_4245: EX28DRAFT_4245 - single stranded DNA-binding protein (ssb), at 51,801 to 52,331 _4245 EX28DRAFT_4246: EX28DRAFT_4246 - excinuclease ABC, A subunit, at 52,582 to 55,404 _4246 EX28DRAFT_4247: EX28DRAFT_4247 - Uncharacterized protein conserved in bacteria, at 55,408 to 55,761 _4247 EX28DRAFT_4248: EX28DRAFT_4248 - secondary thiamine-phosphate synthase enzyme, at 55,764 to 56,180 _4248 EX28DRAFT_4249: EX28DRAFT_4249 - HAD superfamily (subfamily IIIB) phosphatase, TIGR01672, at 56,294 to 57,007 _4249 Position (kb) 52 53 54 55 56Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 51.673 kb on + strand, within EX28DRAFT_4244at 51.673 kb on + strand, within EX28DRAFT_4244at 51.674 kb on - strand, within EX28DRAFT_4244at 51.733 kb on + strandat 51.734 kb on - strandat 52.509 kb on + strandat 52.510 kb on - strandat 52.510 kb on - strandat 52.510 kb on - strandat 52.630 kb on - strandat 52.717 kb on + strandat 52.738 kb on + strandat 52.739 kb on - strandat 52.827 kb on + strandat 52.833 kb on + strandat 52.834 kb on - strandat 52.900 kb on + strand, within EX28DRAFT_4246at 52.900 kb on + strand, within EX28DRAFT_4246at 53.102 kb on - strand, within EX28DRAFT_4246at 53.102 kb on - strand, within EX28DRAFT_4246at 53.102 kb on - strand, within EX28DRAFT_4246at 53.102 kb on - strand, within EX28DRAFT_4246at 53.202 kb on + strand, within EX28DRAFT_4246at 53.444 kb on - strand, within EX28DRAFT_4246at 53.527 kb on + strand, within EX28DRAFT_4246at 53.527 kb on + strand, within EX28DRAFT_4246at 53.527 kb on + strand, within EX28DRAFT_4246at 53.528 kb on - strand, within EX28DRAFT_4246at 53.531 kb on - strand, within EX28DRAFT_4246at 53.659 kb on + strand, within EX28DRAFT_4246at 53.659 kb on + strand, within EX28DRAFT_4246at 53.659 kb on + strand, within EX28DRAFT_4246at 53.660 kb on - strand, within EX28DRAFT_4246at 53.660 kb on - strand, within EX28DRAFT_4246at 54.010 kb on + strand, within EX28DRAFT_4246at 54.010 kb on + strand, within EX28DRAFT_4246at 54.011 kb on - strand, within EX28DRAFT_4246at 54.099 kb on - strand, within EX28DRAFT_4246at 54.110 kb on - strand, within EX28DRAFT_4246at 54.110 kb on - strand, within EX28DRAFT_4246at 54.204 kb on - strand, within EX28DRAFT_4246at 54.278 kb on + strand, within EX28DRAFT_4246at 54.486 kb on + strand, within EX28DRAFT_4246at 54.486 kb on + strand, within EX28DRAFT_4246at 54.486 kb on + strand, within EX28DRAFT_4246at 54.487 kb on - strand, within EX28DRAFT_4246at 54.487 kb on - strand, within EX28DRAFT_4246at 54.679 kb on - strand, within EX28DRAFT_4246at 54.691 kb on + strand, within EX28DRAFT_4246at 54.691 kb on + strand, within EX28DRAFT_4246at 54.759 kb on + strand, within EX28DRAFT_4246at 54.781 kb on - strand, within EX28DRAFT_4246at 54.781 kb on - strand, within EX28DRAFT_4246at 54.859 kb on + strand, within EX28DRAFT_4246at 54.860 kb on - strand, within EX28DRAFT_4246at 54.860 kb on - strand, within EX28DRAFT_4246at 54.860 kb on - strand, within EX28DRAFT_4246at 54.860 kb on - strand, within EX28DRAFT_4246at 54.892 kb on + strand, within EX28DRAFT_4246at 54.916 kb on - strand, within EX28DRAFT_4246at 54.919 kb on + strand, within EX28DRAFT_4246at 54.920 kb on - strand, within EX28DRAFT_4246at 55.006 kb on - strand, within EX28DRAFT_4246at 55.028 kb on + strand, within EX28DRAFT_4246at 55.039 kb on + strand, within EX28DRAFT_4246at 55.039 kb on + strand, within EX28DRAFT_4246at 55.142 kb on - strandat 55.234 kb on - strandat 55.402 kb on + strandat 55.464 kb on - strand, within EX28DRAFT_4247at 55.482 kb on - strand, within EX28DRAFT_4247at 55.485 kb on - strand, within EX28DRAFT_4247at 55.485 kb on - strand, within EX28DRAFT_4247at 55.517 kb on + strand, within EX28DRAFT_4247at 55.674 kb on + strand, within EX28DRAFT_4247at 55.745 kb on - strandat 55.776 kb on + strandat 55.776 kb on + strandat 55.777 kb on - strandat 55.793 kb on + strandat 55.907 kb on + strand, within EX28DRAFT_4248at 55.907 kb on + strand, within EX28DRAFT_4248at 55.952 kb on - strand, within EX28DRAFT_4248at 56.154 kb on + strandat 56.154 kb on + strandat 56.213 kb on - strandat 56.265 kb on - strandat 56.295 kb on + strandat 56.298 kb on + strandat 56.298 kb on + strandat 56.375 kb on + strand, within EX28DRAFT_4249at 56.376 kb on - strand, within EX28DRAFT_4249at 56.376 kb on - strand, within EX28DRAFT_4249

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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51,673 + EX28DRAFT_4244 0.76 -2.2
51,673 + EX28DRAFT_4244 0.76 -1.6
51,674 - EX28DRAFT_4244 0.77 +0.9
51,733 + +0.3
51,734 - -0.5
52,509 + -2.9
52,510 - +0.9
52,510 - -0.4
52,510 - -0.0
52,630 - -1.0
52,717 + -2.5
52,738 + -1.4
52,739 - +1.6
52,827 + -0.6
52,833 + +1.4
52,834 - +0.5
52,900 + EX28DRAFT_4246 0.11 -0.4
52,900 + EX28DRAFT_4246 0.11 +0.8
53,102 - EX28DRAFT_4246 0.18 -0.4
53,102 - EX28DRAFT_4246 0.18 +0.8
53,102 - EX28DRAFT_4246 0.18 +0.1
53,102 - EX28DRAFT_4246 0.18 +0.4
53,202 + EX28DRAFT_4246 0.22 +0.4
53,444 - EX28DRAFT_4246 0.31 -0.5
53,527 + EX28DRAFT_4246 0.33 -2.6
53,527 + EX28DRAFT_4246 0.33 -2.1
53,527 + EX28DRAFT_4246 0.33 -0.6
53,528 - EX28DRAFT_4246 0.34 -0.1
53,531 - EX28DRAFT_4246 0.34 -1.5
53,659 + EX28DRAFT_4246 0.38 -1.2
53,659 + EX28DRAFT_4246 0.38 -0.1
53,659 + EX28DRAFT_4246 0.38 -0.3
53,660 - EX28DRAFT_4246 0.38 -1.4
53,660 - EX28DRAFT_4246 0.38 -1.4
54,010 + EX28DRAFT_4246 0.51 -0.0
54,010 + EX28DRAFT_4246 0.51 -2.4
54,011 - EX28DRAFT_4246 0.51 -4.1
54,099 - EX28DRAFT_4246 0.54 -0.5
54,110 - EX28DRAFT_4246 0.54 +0.3
54,110 - EX28DRAFT_4246 0.54 -0.7
54,204 - EX28DRAFT_4246 0.57 -3.6
54,278 + EX28DRAFT_4246 0.60 -2.0
54,486 + EX28DRAFT_4246 0.67 +0.3
54,486 + EX28DRAFT_4246 0.67 +0.0
54,486 + EX28DRAFT_4246 0.67 +0.4
54,487 - EX28DRAFT_4246 0.67 -2.2
54,487 - EX28DRAFT_4246 0.67 -2.0
54,679 - EX28DRAFT_4246 0.74 -0.2
54,691 + EX28DRAFT_4246 0.75 -0.3
54,691 + EX28DRAFT_4246 0.75 -0.5
54,759 + EX28DRAFT_4246 0.77 -1.1
54,781 - EX28DRAFT_4246 0.78 -0.1
54,781 - EX28DRAFT_4246 0.78 -1.8
54,859 + EX28DRAFT_4246 0.81 -1.0
54,860 - EX28DRAFT_4246 0.81 -1.1
54,860 - EX28DRAFT_4246 0.81 +0.4
54,860 - EX28DRAFT_4246 0.81 -0.5
54,860 - EX28DRAFT_4246 0.81 -1.2
54,892 + EX28DRAFT_4246 0.82 -2.9
54,916 - EX28DRAFT_4246 0.83 +0.6
54,919 + EX28DRAFT_4246 0.83 -1.4
54,920 - EX28DRAFT_4246 0.83 -0.1
55,006 - EX28DRAFT_4246 0.86 +0.9
55,028 + EX28DRAFT_4246 0.87 -2.1
55,039 + EX28DRAFT_4246 0.87 -0.1
55,039 + EX28DRAFT_4246 0.87 +0.1
55,142 - -0.8
55,234 - -2.8
55,402 + +1.1
55,464 - EX28DRAFT_4247 0.16 +0.6
55,482 - EX28DRAFT_4247 0.21 +2.1
55,485 - EX28DRAFT_4247 0.22 +0.4
55,485 - EX28DRAFT_4247 0.22 -0.6
55,517 + EX28DRAFT_4247 0.31 -0.9
55,674 + EX28DRAFT_4247 0.75 +0.9
55,745 - -2.2
55,776 + +0.2
55,776 + +0.8
55,777 - -0.2
55,793 + -1.6
55,907 + EX28DRAFT_4248 0.34 +0.3
55,907 + EX28DRAFT_4248 0.34 -2.0
55,952 - EX28DRAFT_4248 0.45 +2.7
56,154 + -0.1
56,154 + -0.0
56,213 - -1.0
56,265 - +0.5
56,295 + +1.3
56,298 + +0.0
56,298 + -0.2
56,375 + EX28DRAFT_4249 0.11 -0.9
56,376 - EX28DRAFT_4249 0.11 +0.6
56,376 - EX28DRAFT_4249 0.11 +0.3

Or see this region's nucleotide sequence