Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4183 and EX28DRAFT_4184 are separated by 166 nucleotides EX28DRAFT_4184 and EX28DRAFT_4185 overlap by 1 nucleotides EX28DRAFT_4185 and EX28DRAFT_4186 overlap by 1 nucleotides EX28DRAFT_4186 and EX28DRAFT_4187 are separated by 7 nucleotides
EX28DRAFT_4183: EX28DRAFT_4183 - FKBP-type peptidyl-prolyl cis-trans isomerases 1, at 165,766 to 166,572
_4183
EX28DRAFT_4184: EX28DRAFT_4184 - Uncharacterized protein conserved in bacteria, at 166,739 to 167,461
_4184
EX28DRAFT_4185: EX28DRAFT_4185 - sulfur relay protein TusD/DsrE, at 167,461 to 167,847
_4185
EX28DRAFT_4186: EX28DRAFT_4186 - sulfur relay protein TusC/DsrF, at 167,847 to 168,206
_4186
EX28DRAFT_4187: EX28DRAFT_4187 - sulfur relay protein TusB/DsrH, at 168,214 to 168,501
_4187
Position (kb) 166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 165.762 kb on - strand at 165.785 kb on + strand at 166.035 kb on + strand, within EX28DRAFT_4183 at 166.217 kb on - strand, within EX28DRAFT_4183 at 166.288 kb on - strand, within EX28DRAFT_4183 at 166.288 kb on - strand, within EX28DRAFT_4183 at 166.571 kb on - strand at 166.613 kb on - strand at 166.626 kb on + strand at 166.626 kb on + strand at 166.627 kb on - strand at 166.628 kb on + strand at 166.628 kb on + strand at 166.629 kb on - strand at 166.632 kb on + strand at 166.633 kb on - strand at 166.662 kb on + strand at 166.667 kb on + strand at 166.667 kb on + strand at 166.679 kb on + strand at 166.679 kb on + strand at 166.683 kb on + strand at 166.683 kb on + strand at 167.330 kb on + strand, within EX28DRAFT_4184 at 167.408 kb on + strand at 167.414 kb on + strand at 167.416 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 165,762 - -1.8 165,785 + -1.4 166,035 + EX28DRAFT_4183 0.33 -0.7 166,217 - EX28DRAFT_4183 0.56 -0.7 166,288 - EX28DRAFT_4183 0.65 -1.6 166,288 - EX28DRAFT_4183 0.65 -1.0 166,571 - +0.1 166,613 - +0.8 166,626 + +1.1 166,626 + +0.3 166,627 - +0.5 166,628 + -2.3 166,628 + -0.3 166,629 - +0.8 166,632 + +0.2 166,633 - +1.1 166,662 + +0.4 166,667 + +0.3 166,667 + +0.1 166,679 + -1.5 166,679 + -1.0 166,683 + -0.7 166,683 + +0.4 167,330 + EX28DRAFT_4184 0.82 -2.8 167,408 + +0.5 167,414 + +4.1 167,416 + +1.1
Or see this region's nucleotide sequence