Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4163

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4162 and EX28DRAFT_4163 are separated by 239 nucleotidesEX28DRAFT_4163 and EX28DRAFT_4164 are separated by 3 nucleotides EX28DRAFT_4162: EX28DRAFT_4162 - nitrite reductase [NAD(P)H], large subunit, at 142,047 to 144,590 _4162 EX28DRAFT_4163: EX28DRAFT_4163 - Cytosine deaminase and related metal-dependent hydrolases, at 144,830 to 146,146 _4163 EX28DRAFT_4164: EX28DRAFT_4164 - Major Facilitator Superfamily, at 146,150 to 147,334 _4164 Position (kb) 144 145 146 147Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 143.864 kb on + strand, within EX28DRAFT_4162at 144.436 kb on + strandat 144.436 kb on + strandat 144.436 kb on + strandat 144.437 kb on - strandat 144.536 kb on + strandat 144.647 kb on + strandat 144.829 kb on + strandat 144.835 kb on + strandat 144.835 kb on + strandat 144.835 kb on + strandat 144.835 kb on + strandat 144.836 kb on - strandat 144.966 kb on + strand, within EX28DRAFT_4163at 144.966 kb on + strand, within EX28DRAFT_4163at 144.967 kb on - strand, within EX28DRAFT_4163at 145.451 kb on + strand, within EX28DRAFT_4163at 145.452 kb on - strand, within EX28DRAFT_4163at 145.589 kb on + strand, within EX28DRAFT_4163at 145.590 kb on - strand, within EX28DRAFT_4163at 145.601 kb on + strand, within EX28DRAFT_4163at 145.602 kb on - strand, within EX28DRAFT_4163at 145.643 kb on - strand, within EX28DRAFT_4163at 145.860 kb on - strand, within EX28DRAFT_4163at 145.936 kb on + strand, within EX28DRAFT_4163at 146.100 kb on + strandat 146.100 kb on + strandat 146.101 kb on - strandat 146.101 kb on - strandat 146.232 kb on + strandat 146.233 kb on - strandat 146.402 kb on - strand, within EX28DRAFT_4164at 146.403 kb on + strand, within EX28DRAFT_4164at 146.404 kb on - strand, within EX28DRAFT_4164at 146.404 kb on - strand, within EX28DRAFT_4164at 146.449 kb on + strand, within EX28DRAFT_4164at 146.449 kb on + strand, within EX28DRAFT_4164at 146.450 kb on - strand, within EX28DRAFT_4164at 146.450 kb on - strand, within EX28DRAFT_4164at 146.450 kb on - strand, within EX28DRAFT_4164at 146.450 kb on - strand, within EX28DRAFT_4164at 146.487 kb on - strand, within EX28DRAFT_4164at 146.497 kb on + strand, within EX28DRAFT_4164at 146.551 kb on + strand, within EX28DRAFT_4164at 146.574 kb on + strand, within EX28DRAFT_4164at 146.574 kb on + strand, within EX28DRAFT_4164at 146.575 kb on - strand, within EX28DRAFT_4164at 146.575 kb on - strand, within EX28DRAFT_4164at 146.575 kb on - strand, within EX28DRAFT_4164at 146.575 kb on - strand, within EX28DRAFT_4164at 146.575 kb on - strand, within EX28DRAFT_4164at 146.641 kb on - strand, within EX28DRAFT_4164at 146.682 kb on + strand, within EX28DRAFT_4164at 146.682 kb on + strand, within EX28DRAFT_4164at 146.683 kb on - strand, within EX28DRAFT_4164at 146.817 kb on + strand, within EX28DRAFT_4164at 146.818 kb on - strand, within EX28DRAFT_4164at 146.818 kb on - strand, within EX28DRAFT_4164at 146.838 kb on + strand, within EX28DRAFT_4164at 146.838 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.961 kb on + strand, within EX28DRAFT_4164at 146.962 kb on - strand, within EX28DRAFT_4164

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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143,864 + EX28DRAFT_4162 0.71 +2.4
144,436 + -0.2
144,436 + -0.1
144,436 + -0.1
144,437 - -2.3
144,536 + -0.0
144,647 + +0.9
144,829 + +2.6
144,835 + +1.3
144,835 + -1.3
144,835 + +1.6
144,835 + +0.8
144,836 - -1.8
144,966 + EX28DRAFT_4163 0.10 +0.5
144,966 + EX28DRAFT_4163 0.10 +1.0
144,967 - EX28DRAFT_4163 0.10 +1.9
145,451 + EX28DRAFT_4163 0.47 +0.4
145,452 - EX28DRAFT_4163 0.47 -0.3
145,589 + EX28DRAFT_4163 0.58 +0.4
145,590 - EX28DRAFT_4163 0.58 +2.4
145,601 + EX28DRAFT_4163 0.59 +0.4
145,602 - EX28DRAFT_4163 0.59 +0.1
145,643 - EX28DRAFT_4163 0.62 +0.3
145,860 - EX28DRAFT_4163 0.78 -0.0
145,936 + EX28DRAFT_4163 0.84 -0.1
146,100 + -1.4
146,100 + +0.4
146,101 - +0.5
146,101 - +0.4
146,232 + -0.1
146,233 - +1.0
146,402 - EX28DRAFT_4164 0.21 -1.7
146,403 + EX28DRAFT_4164 0.21 +1.1
146,404 - EX28DRAFT_4164 0.21 +0.6
146,404 - EX28DRAFT_4164 0.21 -0.2
146,449 + EX28DRAFT_4164 0.25 +2.6
146,449 + EX28DRAFT_4164 0.25 -2.9
146,450 - EX28DRAFT_4164 0.25 -0.1
146,450 - EX28DRAFT_4164 0.25 +0.1
146,450 - EX28DRAFT_4164 0.25 -0.5
146,450 - EX28DRAFT_4164 0.25 -0.2
146,487 - EX28DRAFT_4164 0.28 +0.4
146,497 + EX28DRAFT_4164 0.29 +1.0
146,551 + EX28DRAFT_4164 0.34 +2.4
146,574 + EX28DRAFT_4164 0.36 -0.4
146,574 + EX28DRAFT_4164 0.36 -1.2
146,575 - EX28DRAFT_4164 0.36 +0.7
146,575 - EX28DRAFT_4164 0.36 +5.4
146,575 - EX28DRAFT_4164 0.36 +0.2
146,575 - EX28DRAFT_4164 0.36 -0.5
146,575 - EX28DRAFT_4164 0.36 +0.7
146,641 - EX28DRAFT_4164 0.41 +1.3
146,682 + EX28DRAFT_4164 0.45 -0.6
146,682 + EX28DRAFT_4164 0.45 +0.7
146,683 - EX28DRAFT_4164 0.45 -0.9
146,817 + EX28DRAFT_4164 0.56 +0.5
146,818 - EX28DRAFT_4164 0.56 +0.3
146,818 - EX28DRAFT_4164 0.56 -0.4
146,838 + EX28DRAFT_4164 0.58 +0.8
146,838 + EX28DRAFT_4164 0.58 -0.7
146,961 + EX28DRAFT_4164 0.68 -0.1
146,961 + EX28DRAFT_4164 0.68 +1.0
146,961 + EX28DRAFT_4164 0.68 -1.8
146,961 + EX28DRAFT_4164 0.68 +1.2
146,961 + EX28DRAFT_4164 0.68 +0.7
146,961 + EX28DRAFT_4164 0.68 +0.5
146,962 - EX28DRAFT_4164 0.69 +0.8

Or see this region's nucleotide sequence