Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4117 and EX28DRAFT_4118 overlap by 1 nucleotides EX28DRAFT_4118 and EX28DRAFT_4119 are separated by 18 nucleotides
EX28DRAFT_4117: EX28DRAFT_4117 - glucose-1-phosphate adenylyltransferase, at 90,334 to 91,629
_4117
EX28DRAFT_4118: EX28DRAFT_4118 - glycogen/starch synthase, ADP-glucose type, at 91,629 to 93,062
_4118
EX28DRAFT_4119: EX28DRAFT_4119 - glycogen/starch/alpha-glucan phosphorylases, at 93,081 to 95,528
_4119
Position (kb) 91
92
93
94 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 90.737 kb on - strand, within EX28DRAFT_4117 at 90.762 kb on + strand, within EX28DRAFT_4117 at 90.762 kb on + strand, within EX28DRAFT_4117 at 90.763 kb on - strand, within EX28DRAFT_4117 at 90.766 kb on + strand, within EX28DRAFT_4117 at 90.766 kb on + strand, within EX28DRAFT_4117 at 90.766 kb on + strand, within EX28DRAFT_4117 at 90.766 kb on + strand, within EX28DRAFT_4117 at 90.766 kb on + strand, within EX28DRAFT_4117 at 90.766 kb on + strand, within EX28DRAFT_4117 at 90.767 kb on - strand, within EX28DRAFT_4117 at 90.767 kb on - strand, within EX28DRAFT_4117 at 90.767 kb on - strand, within EX28DRAFT_4117 at 90.767 kb on - strand, within EX28DRAFT_4117 at 90.767 kb on - strand, within EX28DRAFT_4117 at 90.767 kb on - strand, within EX28DRAFT_4117 at 90.778 kb on + strand, within EX28DRAFT_4117 at 90.979 kb on + strand, within EX28DRAFT_4117 at 90.979 kb on + strand, within EX28DRAFT_4117 at 90.980 kb on - strand, within EX28DRAFT_4117 at 90.997 kb on + strand, within EX28DRAFT_4117 at 90.997 kb on + strand, within EX28DRAFT_4117 at 90.997 kb on + strand, within EX28DRAFT_4117 at 90.998 kb on - strand, within EX28DRAFT_4117 at 91.004 kb on - strand, within EX28DRAFT_4117 at 91.096 kb on + strand, within EX28DRAFT_4117 at 91.227 kb on + strand, within EX28DRAFT_4117 at 91.227 kb on + strand, within EX28DRAFT_4117 at 91.231 kb on + strand, within EX28DRAFT_4117 at 91.231 kb on + strand, within EX28DRAFT_4117 at 91.232 kb on - strand, within EX28DRAFT_4117 at 91.232 kb on - strand, within EX28DRAFT_4117 at 91.232 kb on - strand, within EX28DRAFT_4117 at 91.232 kb on - strand, within EX28DRAFT_4117 at 91.351 kb on - strand, within EX28DRAFT_4117 at 91.413 kb on + strand, within EX28DRAFT_4117 at 91.413 kb on + strand, within EX28DRAFT_4117 at 91.414 kb on - strand, within EX28DRAFT_4117 at 91.580 kb on + strand at 91.639 kb on + strand at 91.639 kb on + strand at 91.645 kb on + strand at 91.645 kb on + strand at 91.645 kb on + strand at 91.645 kb on + strand at 91.645 kb on + strand at 91.645 kb on + strand at 91.645 kb on + strand at 91.646 kb on - strand at 91.646 kb on - strand at 91.646 kb on - strand at 91.646 kb on - strand at 91.646 kb on - strand at 91.646 kb on - strand at 91.646 kb on - strand at 91.848 kb on + strand, within EX28DRAFT_4118 at 91.848 kb on + strand, within EX28DRAFT_4118 at 91.848 kb on + strand, within EX28DRAFT_4118 at 91.848 kb on + strand, within EX28DRAFT_4118 at 91.849 kb on - strand, within EX28DRAFT_4118 at 91.849 kb on - strand, within EX28DRAFT_4118 at 91.849 kb on - strand, within EX28DRAFT_4118 at 91.888 kb on + strand, within EX28DRAFT_4118 at 91.888 kb on + strand, within EX28DRAFT_4118 at 91.889 kb on - strand, within EX28DRAFT_4118 at 91.890 kb on + strand, within EX28DRAFT_4118 at 91.919 kb on + strand, within EX28DRAFT_4118 at 91.936 kb on - strand, within EX28DRAFT_4118 at 92.111 kb on + strand, within EX28DRAFT_4118 at 92.133 kb on + strand, within EX28DRAFT_4118 at 92.133 kb on + strand, within EX28DRAFT_4118 at 92.133 kb on + strand, within EX28DRAFT_4118 at 92.133 kb on + strand, within EX28DRAFT_4118 at 92.134 kb on - strand, within EX28DRAFT_4118 at 92.134 kb on - strand, within EX28DRAFT_4118 at 92.134 kb on - strand, within EX28DRAFT_4118 at 92.134 kb on - strand, within EX28DRAFT_4118 at 92.134 kb on - strand, within EX28DRAFT_4118 at 92.134 kb on - strand, within EX28DRAFT_4118 at 92.134 kb on - strand, within EX28DRAFT_4118 at 92.134 kb on - strand, within EX28DRAFT_4118 at 92.136 kb on + strand, within EX28DRAFT_4118 at 92.137 kb on - strand, within EX28DRAFT_4118 at 92.137 kb on - strand, within EX28DRAFT_4118 at 92.179 kb on - strand, within EX28DRAFT_4118 at 92.180 kb on + strand, within EX28DRAFT_4118 at 92.239 kb on - strand, within EX28DRAFT_4118 at 92.249 kb on + strand, within EX28DRAFT_4118 at 92.249 kb on + strand, within EX28DRAFT_4118 at 92.250 kb on - strand, within EX28DRAFT_4118 at 92.250 kb on - strand, within EX28DRAFT_4118 at 92.250 kb on - strand, within EX28DRAFT_4118 at 92.250 kb on - strand, within EX28DRAFT_4118 at 92.272 kb on - strand, within EX28DRAFT_4118 at 92.578 kb on + strand, within EX28DRAFT_4118 at 92.906 kb on + strand, within EX28DRAFT_4118 at 92.907 kb on - strand, within EX28DRAFT_4118 at 93.009 kb on - strand at 93.009 kb on - strand at 93.045 kb on + strand at 93.060 kb on + strand at 93.060 kb on + strand at 93.060 kb on + strand at 93.080 kb on + strand at 93.095 kb on + strand at 93.095 kb on + strand at 93.095 kb on + strand at 93.100 kb on - strand at 93.147 kb on + strand at 93.185 kb on - strand at 93.185 kb on - strand at 93.239 kb on - strand at 93.239 kb on - strand at 93.301 kb on - strand at 93.301 kb on - strand at 93.301 kb on - strand at 93.359 kb on + strand, within EX28DRAFT_4119 at 93.359 kb on + strand, within EX28DRAFT_4119 at 93.360 kb on - strand, within EX28DRAFT_4119 at 93.360 kb on - strand, within EX28DRAFT_4119 at 93.401 kb on - strand, within EX28DRAFT_4119 at 93.401 kb on - strand, within EX28DRAFT_4119 at 93.401 kb on - strand, within EX28DRAFT_4119 at 93.406 kb on + strand, within EX28DRAFT_4119 at 93.406 kb on + strand, within EX28DRAFT_4119 at 93.542 kb on + strand, within EX28DRAFT_4119 at 93.542 kb on + strand, within EX28DRAFT_4119 at 93.542 kb on + strand, within EX28DRAFT_4119 at 93.543 kb on - strand, within EX28DRAFT_4119 at 93.543 kb on - strand, within EX28DRAFT_4119 at 93.591 kb on + strand, within EX28DRAFT_4119 at 93.623 kb on + strand, within EX28DRAFT_4119 at 93.643 kb on - strand, within EX28DRAFT_4119 at 93.834 kb on + strand, within EX28DRAFT_4119 at 93.835 kb on - strand, within EX28DRAFT_4119 at 93.855 kb on - strand, within EX28DRAFT_4119 at 93.906 kb on + strand, within EX28DRAFT_4119 at 93.906 kb on + strand, within EX28DRAFT_4119 at 93.907 kb on - strand, within EX28DRAFT_4119 at 93.907 kb on - strand, within EX28DRAFT_4119 at 94.002 kb on + strand, within EX28DRAFT_4119 at 94.003 kb on - strand, within EX28DRAFT_4119
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 90,737 - EX28DRAFT_4117 0.31 -0.4 90,762 + EX28DRAFT_4117 0.33 +0.8 90,762 + EX28DRAFT_4117 0.33 +0.4 90,763 - EX28DRAFT_4117 0.33 +0.6 90,766 + EX28DRAFT_4117 0.33 +0.1 90,766 + EX28DRAFT_4117 0.33 -0.4 90,766 + EX28DRAFT_4117 0.33 -1.5 90,766 + EX28DRAFT_4117 0.33 +0.4 90,766 + EX28DRAFT_4117 0.33 -1.4 90,766 + EX28DRAFT_4117 0.33 +0.7 90,767 - EX28DRAFT_4117 0.33 +1.2 90,767 - EX28DRAFT_4117 0.33 +0.6 90,767 - EX28DRAFT_4117 0.33 +0.5 90,767 - EX28DRAFT_4117 0.33 -1.3 90,767 - EX28DRAFT_4117 0.33 +0.8 90,767 - EX28DRAFT_4117 0.33 -0.2 90,778 + EX28DRAFT_4117 0.34 -0.5 90,979 + EX28DRAFT_4117 0.50 +0.2 90,979 + EX28DRAFT_4117 0.50 +0.4 90,980 - EX28DRAFT_4117 0.50 +7.3 90,997 + EX28DRAFT_4117 0.51 -0.4 90,997 + EX28DRAFT_4117 0.51 +0.5 90,997 + EX28DRAFT_4117 0.51 +0.6 90,998 - EX28DRAFT_4117 0.51 +0.0 91,004 - EX28DRAFT_4117 0.52 -0.2 91,096 + EX28DRAFT_4117 0.59 +0.6 91,227 + EX28DRAFT_4117 0.69 +0.5 91,227 + EX28DRAFT_4117 0.69 +1.3 91,231 + EX28DRAFT_4117 0.69 -1.1 91,231 + EX28DRAFT_4117 0.69 +1.4 91,232 - EX28DRAFT_4117 0.69 +0.8 91,232 - EX28DRAFT_4117 0.69 -0.7 91,232 - EX28DRAFT_4117 0.69 +0.3 91,232 - EX28DRAFT_4117 0.69 -0.1 91,351 - EX28DRAFT_4117 0.78 +0.2 91,413 + EX28DRAFT_4117 0.83 +1.0 91,413 + EX28DRAFT_4117 0.83 -1.7 91,414 - EX28DRAFT_4117 0.83 -0.3 91,580 + +2.7 91,639 + +0.2 91,639 + +0.2 91,645 + +0.2 91,645 + -0.5 91,645 + +0.3 91,645 + -0.2 91,645 + +0.9 91,645 + -2.3 91,645 + +0.8 91,646 - -0.1 91,646 - +0.1 91,646 - -0.5 91,646 - -2.4 91,646 - -1.2 91,646 - +1.9 91,646 - -2.6 91,848 + EX28DRAFT_4118 0.15 -0.4 91,848 + EX28DRAFT_4118 0.15 +0.5 91,848 + EX28DRAFT_4118 0.15 +1.2 91,848 + EX28DRAFT_4118 0.15 +0.2 91,849 - EX28DRAFT_4118 0.15 -0.5 91,849 - EX28DRAFT_4118 0.15 -0.8 91,849 - EX28DRAFT_4118 0.15 -1.7 91,888 + EX28DRAFT_4118 0.18 -3.3 91,888 + EX28DRAFT_4118 0.18 +0.9 91,889 - EX28DRAFT_4118 0.18 -2.5 91,890 + EX28DRAFT_4118 0.18 -2.0 91,919 + EX28DRAFT_4118 0.20 +0.4 91,936 - EX28DRAFT_4118 0.21 -0.4 92,111 + EX28DRAFT_4118 0.34 -2.7 92,133 + EX28DRAFT_4118 0.35 -1.8 92,133 + EX28DRAFT_4118 0.35 -1.9 92,133 + EX28DRAFT_4118 0.35 +0.1 92,133 + EX28DRAFT_4118 0.35 +0.3 92,134 - EX28DRAFT_4118 0.35 -1.2 92,134 - EX28DRAFT_4118 0.35 -0.1 92,134 - EX28DRAFT_4118 0.35 -0.7 92,134 - EX28DRAFT_4118 0.35 -1.4 92,134 - EX28DRAFT_4118 0.35 -0.9 92,134 - EX28DRAFT_4118 0.35 -3.2 92,134 - EX28DRAFT_4118 0.35 +0.7 92,134 - EX28DRAFT_4118 0.35 -0.7 92,136 + EX28DRAFT_4118 0.35 +0.0 92,137 - EX28DRAFT_4118 0.35 -2.2 92,137 - EX28DRAFT_4118 0.35 +1.0 92,179 - EX28DRAFT_4118 0.38 -0.2 92,180 + EX28DRAFT_4118 0.38 -0.1 92,239 - EX28DRAFT_4118 0.43 +0.8 92,249 + EX28DRAFT_4118 0.43 -3.6 92,249 + EX28DRAFT_4118 0.43 -1.5 92,250 - EX28DRAFT_4118 0.43 -0.6 92,250 - EX28DRAFT_4118 0.43 -1.6 92,250 - EX28DRAFT_4118 0.43 -0.2 92,250 - EX28DRAFT_4118 0.43 +0.1 92,272 - EX28DRAFT_4118 0.45 -0.7 92,578 + EX28DRAFT_4118 0.66 +0.4 92,906 + EX28DRAFT_4118 0.89 -1.6 92,907 - EX28DRAFT_4118 0.89 -0.8 93,009 - -0.7 93,009 - +2.4 93,045 + -1.7 93,060 + +0.7 93,060 + +1.0 93,060 + -1.4 93,080 + -2.2 93,095 + -2.1 93,095 + +0.9 93,095 + -0.3 93,100 - -1.1 93,147 + -1.5 93,185 - -1.2 93,185 - -1.4 93,239 - -0.0 93,239 - -1.8 93,301 - +0.2 93,301 - -0.2 93,301 - +0.9 93,359 + EX28DRAFT_4119 0.11 -0.7 93,359 + EX28DRAFT_4119 0.11 -0.7 93,360 - EX28DRAFT_4119 0.11 +0.2 93,360 - EX28DRAFT_4119 0.11 -1.8 93,401 - EX28DRAFT_4119 0.13 +0.3 93,401 - EX28DRAFT_4119 0.13 +1.1 93,401 - EX28DRAFT_4119 0.13 -0.7 93,406 + EX28DRAFT_4119 0.13 -2.3 93,406 + EX28DRAFT_4119 0.13 -3.6 93,542 + EX28DRAFT_4119 0.19 +0.1 93,542 + EX28DRAFT_4119 0.19 -2.6 93,542 + EX28DRAFT_4119 0.19 +0.5 93,543 - EX28DRAFT_4119 0.19 +0.4 93,543 - EX28DRAFT_4119 0.19 -1.8 93,591 + EX28DRAFT_4119 0.21 +0.3 93,623 + EX28DRAFT_4119 0.22 -0.5 93,643 - EX28DRAFT_4119 0.23 -4.3 93,834 + EX28DRAFT_4119 0.31 -0.4 93,835 - EX28DRAFT_4119 0.31 -0.9 93,855 - EX28DRAFT_4119 0.32 +0.8 93,906 + EX28DRAFT_4119 0.34 -2.1 93,906 + EX28DRAFT_4119 0.34 +0.4 93,907 - EX28DRAFT_4119 0.34 -2.3 93,907 - EX28DRAFT_4119 0.34 -1.2 94,002 + EX28DRAFT_4119 0.38 +2.4 94,003 - EX28DRAFT_4119 0.38 -0.4
Or see this region's nucleotide sequence