Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4076 and EX28DRAFT_4077 are separated by 60 nucleotides EX28DRAFT_4077 and EX28DRAFT_4078 are separated by 329 nucleotides EX28DRAFT_4078 and EX28DRAFT_4079 are separated by 5 nucleotides
EX28DRAFT_4076: EX28DRAFT_4076 - integral membrane protein, TerC family, at 51,144 to 52,169
_4076
EX28DRAFT_4077: EX28DRAFT_4077 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 52,230 to 52,892
_4077
EX28DRAFT_4078: EX28DRAFT_4078 - NlpC/P60 family, at 53,222 to 53,659
_4078
EX28DRAFT_4079: EX28DRAFT_4079 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 53,665 to 54,459
_4079
Position (kb) 52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 51.231 kb on - strand at 51.324 kb on + strand, within EX28DRAFT_4076 at 51.325 kb on - strand, within EX28DRAFT_4076 at 51.795 kb on + strand, within EX28DRAFT_4076 at 51.907 kb on - strand, within EX28DRAFT_4076 at 51.907 kb on - strand, within EX28DRAFT_4076 at 51.948 kb on + strand, within EX28DRAFT_4076 at 51.948 kb on + strand, within EX28DRAFT_4076 at 51.948 kb on + strand, within EX28DRAFT_4076 at 52.130 kb on + strand at 52.133 kb on - strand at 52.173 kb on - strand at 52.413 kb on - strand, within EX28DRAFT_4077 at 52.799 kb on + strand, within EX28DRAFT_4077 at 52.892 kb on + strand at 52.904 kb on - strand at 52.933 kb on + strand at 52.942 kb on + strand at 52.943 kb on - strand at 52.943 kb on - strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.958 kb on - strand at 52.960 kb on - strand at 52.960 kb on - strand at 53.046 kb on + strand at 53.069 kb on + strand at 53.073 kb on + strand at 53.117 kb on + strand at 53.117 kb on + strand at 53.117 kb on + strand at 53.117 kb on + strand at 53.132 kb on - strand at 53.140 kb on + strand at 53.140 kb on + strand at 53.141 kb on - strand at 53.351 kb on - strand, within EX28DRAFT_4078 at 53.534 kb on + strand, within EX28DRAFT_4078 at 53.534 kb on + strand, within EX28DRAFT_4078 at 53.534 kb on + strand, within EX28DRAFT_4078 at 53.535 kb on - strand, within EX28DRAFT_4078 at 53.535 kb on - strand, within EX28DRAFT_4078 at 53.535 kb on - strand, within EX28DRAFT_4078 at 53.537 kb on - strand, within EX28DRAFT_4078 at 53.554 kb on + strand, within EX28DRAFT_4078 at 53.554 kb on + strand, within EX28DRAFT_4078 at 53.555 kb on - strand, within EX28DRAFT_4078 at 53.621 kb on + strand at 53.621 kb on + strand at 53.621 kb on + strand at 53.621 kb on + strand at 53.621 kb on + strand at 53.622 kb on - strand at 53.622 kb on - strand at 53.622 kb on - strand at 53.671 kb on - strand at 53.744 kb on + strand at 53.745 kb on - strand, within EX28DRAFT_4079 at 53.745 kb on - strand, within EX28DRAFT_4079 at 53.745 kb on - strand, within EX28DRAFT_4079 at 53.755 kb on - strand, within EX28DRAFT_4079
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 51,231 - -0.7 51,324 + EX28DRAFT_4076 0.18 -1.1 51,325 - EX28DRAFT_4076 0.18 +0.0 51,795 + EX28DRAFT_4076 0.63 +0.1 51,907 - EX28DRAFT_4076 0.74 +0.6 51,907 - EX28DRAFT_4076 0.74 +0.4 51,948 + EX28DRAFT_4076 0.78 -0.1 51,948 + EX28DRAFT_4076 0.78 -0.3 51,948 + EX28DRAFT_4076 0.78 -0.9 52,130 + -3.0 52,133 - -2.7 52,173 - +1.8 52,413 - EX28DRAFT_4077 0.28 +0.4 52,799 + EX28DRAFT_4077 0.86 -2.8 52,892 + -3.0 52,904 - -1.3 52,933 + +1.6 52,942 + -0.6 52,943 - -0.9 52,943 - +0.6 52,957 + +0.3 52,957 + -2.3 52,958 - +1.6 52,960 - +0.6 52,960 - +0.4 53,046 + +1.5 53,069 + +1.6 53,073 + -1.7 53,117 + +0.2 53,117 + -0.3 53,117 + +0.7 53,117 + +0.6 53,132 - -0.1 53,140 + -0.8 53,140 + +0.6 53,141 - -1.4 53,351 - EX28DRAFT_4078 0.29 +0.0 53,534 + EX28DRAFT_4078 0.71 +1.3 53,534 + EX28DRAFT_4078 0.71 -0.2 53,534 + EX28DRAFT_4078 0.71 +3.6 53,535 - EX28DRAFT_4078 0.71 +0.3 53,535 - EX28DRAFT_4078 0.71 +0.9 53,535 - EX28DRAFT_4078 0.71 -0.0 53,537 - EX28DRAFT_4078 0.72 -0.8 53,554 + EX28DRAFT_4078 0.76 -1.9 53,554 + EX28DRAFT_4078 0.76 +0.9 53,555 - EX28DRAFT_4078 0.76 -0.3 53,621 + -0.4 53,621 + +1.2 53,621 + +1.5 53,621 + -0.3 53,621 + +0.4 53,622 - -0.3 53,622 - -1.6 53,622 - +0.2 53,671 - -0.0 53,744 + +2.1 53,745 - EX28DRAFT_4079 0.10 +1.2 53,745 - EX28DRAFT_4079 0.10 -0.8 53,745 - EX28DRAFT_4079 0.10 +0.7 53,755 - EX28DRAFT_4079 0.11 -0.2
Or see this region's nucleotide sequence