Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4017 and EX28DRAFT_4018 are separated by 374 nucleotides EX28DRAFT_4018 and EX28DRAFT_4019 are separated by 90 nucleotides EX28DRAFT_4019 and EX28DRAFT_4020 are separated by 151 nucleotides
EX28DRAFT_4017: EX28DRAFT_4017 - glucose-inhibited division protein A, at 226,415 to 228,304
_4017
EX28DRAFT_4018: EX28DRAFT_4018 - Flavodoxins, at 228,679 to 229,128
_4018
EX28DRAFT_4019: EX28DRAFT_4019 - Transcriptional regulators, at 229,219 to 229,677
_4019
EX28DRAFT_4020: EX28DRAFT_4020 - aspartate-ammonia ligase (EC 6.3.1.1), at 229,829 to 230,821
_4020
Position (kb) 228
229
230 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 228.364 kb on - strand at 228.364 kb on - strand at 228.364 kb on - strand at 228.409 kb on - strand at 228.920 kb on + strand, within EX28DRAFT_4018 at 228.921 kb on - strand, within EX28DRAFT_4018 at 228.922 kb on + strand, within EX28DRAFT_4018 at 228.922 kb on + strand, within EX28DRAFT_4018 at 229.145 kb on + strand at 229.163 kb on - strand at 229.163 kb on - strand at 229.163 kb on - strand at 229.163 kb on - strand at 229.163 kb on - strand at 229.234 kb on - strand at 229.308 kb on + strand, within EX28DRAFT_4019 at 229.308 kb on + strand, within EX28DRAFT_4019 at 229.308 kb on + strand, within EX28DRAFT_4019 at 229.308 kb on + strand, within EX28DRAFT_4019 at 229.308 kb on + strand, within EX28DRAFT_4019 at 229.308 kb on + strand, within EX28DRAFT_4019 at 229.309 kb on - strand, within EX28DRAFT_4019 at 229.309 kb on - strand, within EX28DRAFT_4019 at 229.312 kb on + strand, within EX28DRAFT_4019 at 229.312 kb on + strand, within EX28DRAFT_4019 at 229.313 kb on - strand, within EX28DRAFT_4019 at 229.313 kb on - strand, within EX28DRAFT_4019 at 229.351 kb on - strand, within EX28DRAFT_4019 at 229.354 kb on - strand, within EX28DRAFT_4019 at 229.380 kb on - strand, within EX28DRAFT_4019 at 229.380 kb on - strand, within EX28DRAFT_4019 at 229.383 kb on - strand, within EX28DRAFT_4019 at 229.803 kb on - strand at 229.823 kb on + strand at 229.823 kb on + strand at 229.823 kb on + strand at 229.823 kb on + strand at 229.824 kb on - strand at 229.824 kb on - strand at 229.827 kb on + strand at 229.827 kb on + strand at 229.827 kb on + strand at 229.842 kb on - strand at 229.842 kb on - strand at 229.873 kb on - strand at 229.966 kb on + strand, within EX28DRAFT_4020 at 229.967 kb on - strand, within EX28DRAFT_4020 at 230.105 kb on + strand, within EX28DRAFT_4020
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 228,364 - +0.4 228,364 - +0.2 228,364 - -0.3 228,409 - -0.2 228,920 + EX28DRAFT_4018 0.54 +1.3 228,921 - EX28DRAFT_4018 0.54 -2.8 228,922 + EX28DRAFT_4018 0.54 -4.2 228,922 + EX28DRAFT_4018 0.54 -0.5 229,145 + -0.2 229,163 - -0.1 229,163 - -2.9 229,163 - +0.0 229,163 - -0.5 229,163 - -1.5 229,234 - +1.0 229,308 + EX28DRAFT_4019 0.19 -0.9 229,308 + EX28DRAFT_4019 0.19 -0.1 229,308 + EX28DRAFT_4019 0.19 -1.2 229,308 + EX28DRAFT_4019 0.19 +0.2 229,308 + EX28DRAFT_4019 0.19 +1.8 229,308 + EX28DRAFT_4019 0.19 -1.8 229,309 - EX28DRAFT_4019 0.20 +0.1 229,309 - EX28DRAFT_4019 0.20 -2.6 229,312 + EX28DRAFT_4019 0.20 -0.3 229,312 + EX28DRAFT_4019 0.20 +0.3 229,313 - EX28DRAFT_4019 0.20 +0.7 229,313 - EX28DRAFT_4019 0.20 +1.0 229,351 - EX28DRAFT_4019 0.29 -0.4 229,354 - EX28DRAFT_4019 0.29 +0.7 229,380 - EX28DRAFT_4019 0.35 +0.1 229,380 - EX28DRAFT_4019 0.35 -2.0 229,383 - EX28DRAFT_4019 0.36 -0.3 229,803 - -0.9 229,823 + -1.0 229,823 + -0.2 229,823 + -3.0 229,823 + +0.9 229,824 - +0.6 229,824 - +1.0 229,827 + -3.6 229,827 + -2.9 229,827 + -2.8 229,842 - +0.6 229,842 - -2.2 229,873 - -1.5 229,966 + EX28DRAFT_4020 0.14 +0.4 229,967 - EX28DRAFT_4020 0.14 +2.5 230,105 + EX28DRAFT_4020 0.28 +1.1
Or see this region's nucleotide sequence