Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4013 and EX28DRAFT_4014 are separated by 49 nucleotides EX28DRAFT_4014 and EX28DRAFT_4015 are separated by 8 nucleotides EX28DRAFT_4015 and EX28DRAFT_4016 are separated by 616 nucleotides
EX28DRAFT_4013: EX28DRAFT_4013 - ATP synthase, F0 subunit c, at 223,574 to 223,813
_4013
EX28DRAFT_4014: EX28DRAFT_4014 - F0F1-type ATP synthase, subunit a, at 223,863 to 224,678
_4014
EX28DRAFT_4015: EX28DRAFT_4015 - F0F1-type ATP synthase, subunit I, at 224,687 to 225,067
_4015
EX28DRAFT_4016: EX28DRAFT_4016 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 225,684 to 226,307
_4016
Position (kb) 224
225
226 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 224.825 kb on - strand, within EX28DRAFT_4015 at 224.876 kb on - strand, within EX28DRAFT_4015 at 225.047 kb on - strand at 225.097 kb on - strand at 225.097 kb on - strand at 225.113 kb on - strand at 225.161 kb on - strand at 225.195 kb on - strand at 225.217 kb on + strand at 225.351 kb on + strand at 225.351 kb on + strand at 225.352 kb on - strand at 225.352 kb on - strand at 225.352 kb on - strand at 225.453 kb on - strand at 225.468 kb on - strand at 225.701 kb on + strand at 225.702 kb on - strand at 225.705 kb on + strand at 225.744 kb on + strand at 225.744 kb on + strand at 225.854 kb on + strand, within EX28DRAFT_4016 at 225.855 kb on - strand, within EX28DRAFT_4016 at 225.985 kb on - strand, within EX28DRAFT_4016
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 224,825 - EX28DRAFT_4015 0.36 +1.6 224,876 - EX28DRAFT_4015 0.50 +0.7 225,047 - +1.8 225,097 - -0.9 225,097 - +1.4 225,113 - -0.5 225,161 - +2.8 225,195 - -0.3 225,217 + +0.7 225,351 + +0.3 225,351 + -4.1 225,352 - -1.0 225,352 - +0.8 225,352 - +1.2 225,453 - -0.0 225,468 - +0.5 225,701 + +0.1 225,702 - -1.0 225,705 + -0.1 225,744 + -1.8 225,744 + -0.1 225,854 + EX28DRAFT_4016 0.27 +0.5 225,855 - EX28DRAFT_4016 0.27 +1.3 225,985 - EX28DRAFT_4016 0.48 -2.5
Or see this region's nucleotide sequence