Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3945 and EX28DRAFT_3946 are separated by 233 nucleotides EX28DRAFT_3946 and EX28DRAFT_3947 are separated by 56 nucleotides EX28DRAFT_3947 and EX28DRAFT_3948 are separated by 290 nucleotides
EX28DRAFT_3945: EX28DRAFT_3945 - Protein of unknown function (DUF1198), at 155,520 to 155,972
_3945
EX28DRAFT_3946: EX28DRAFT_3946 - hypothetical protein, at 156,206 to 156,661
_3946
EX28DRAFT_3947: EX28DRAFT_3947 - RNA, at 156,718 to 156,806
_3947
EX28DRAFT_3948: EX28DRAFT_3948 - KAP family P-loop domain, at 157,097 to 158,623
_3948
Position (kb) 156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 156.039 kb on + strand at 156.040 kb on - strand at 156.042 kb on + strand at 156.043 kb on - strand at 156.110 kb on - strand at 156.110 kb on - strand at 156.169 kb on + strand at 156.187 kb on - strand at 156.222 kb on + strand at 156.223 kb on - strand at 156.238 kb on - strand at 156.266 kb on + strand, within EX28DRAFT_3946 at 156.267 kb on - strand, within EX28DRAFT_3946 at 156.290 kb on + strand, within EX28DRAFT_3946 at 156.310 kb on + strand, within EX28DRAFT_3946 at 156.315 kb on - strand, within EX28DRAFT_3946 at 156.315 kb on - strand, within EX28DRAFT_3946 at 156.336 kb on - strand, within EX28DRAFT_3946 at 156.423 kb on - strand, within EX28DRAFT_3946 at 156.476 kb on + strand, within EX28DRAFT_3946 at 156.476 kb on + strand, within EX28DRAFT_3946 at 156.491 kb on + strand, within EX28DRAFT_3946 at 156.499 kb on + strand, within EX28DRAFT_3946 at 156.499 kb on + strand, within EX28DRAFT_3946 at 156.500 kb on - strand, within EX28DRAFT_3946 at 156.500 kb on - strand, within EX28DRAFT_3946 at 156.500 kb on - strand, within EX28DRAFT_3946 at 156.602 kb on + strand, within EX28DRAFT_3946 at 156.602 kb on + strand, within EX28DRAFT_3946 at 156.603 kb on - strand, within EX28DRAFT_3946 at 156.603 kb on - strand, within EX28DRAFT_3946 at 156.614 kb on - strand, within EX28DRAFT_3946 at 156.640 kb on + strand at 156.652 kb on + strand at 156.684 kb on + strand at 156.689 kb on + strand at 156.689 kb on + strand at 156.690 kb on - strand at 156.741 kb on + strand, within EX28DRAFT_3947 at 156.856 kb on + strand at 156.926 kb on + strand at 156.940 kb on + strand at 157.036 kb on + strand at 157.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 156,039 + +0.5 156,040 - -0.6 156,042 + -1.6 156,043 - -3.1 156,110 - +0.5 156,110 - -1.1 156,169 + -0.1 156,187 - +1.0 156,222 + +2.9 156,223 - +0.7 156,238 - -0.9 156,266 + EX28DRAFT_3946 0.13 -0.1 156,267 - EX28DRAFT_3946 0.13 +0.5 156,290 + EX28DRAFT_3946 0.18 -0.2 156,310 + EX28DRAFT_3946 0.23 -0.4 156,315 - EX28DRAFT_3946 0.24 +1.1 156,315 - EX28DRAFT_3946 0.24 -0.8 156,336 - EX28DRAFT_3946 0.29 +2.5 156,423 - EX28DRAFT_3946 0.48 -1.6 156,476 + EX28DRAFT_3946 0.59 -1.1 156,476 + EX28DRAFT_3946 0.59 -1.0 156,491 + EX28DRAFT_3946 0.62 +4.6 156,499 + EX28DRAFT_3946 0.64 -0.6 156,499 + EX28DRAFT_3946 0.64 +4.2 156,500 - EX28DRAFT_3946 0.64 +2.6 156,500 - EX28DRAFT_3946 0.64 +0.7 156,500 - EX28DRAFT_3946 0.64 +0.1 156,602 + EX28DRAFT_3946 0.87 +0.1 156,602 + EX28DRAFT_3946 0.87 +2.5 156,603 - EX28DRAFT_3946 0.87 -0.1 156,603 - EX28DRAFT_3946 0.87 -1.3 156,614 - EX28DRAFT_3946 0.89 -0.5 156,640 + -3.1 156,652 + +0.1 156,684 + +0.4 156,689 + -0.2 156,689 + +0.3 156,690 - +4.0 156,741 + EX28DRAFT_3947 0.26 -0.2 156,856 + -0.0 156,926 + -0.7 156,940 + +0.4 157,036 + +0.6 157,066 - +1.0
Or see this region's nucleotide sequence