Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3850 and EX28DRAFT_3851 overlap by 4 nucleotides EX28DRAFT_3851 and EX28DRAFT_3852 are separated by 58 nucleotides EX28DRAFT_3852 and EX28DRAFT_3853 are separated by 336 nucleotides
EX28DRAFT_3850: EX28DRAFT_3850 - Mannitol-1-phosphate/altronate dehydrogenases, at 60,092 to 61,240
_3850
EX28DRAFT_3851: EX28DRAFT_3851 - Transcriptional regulator, at 61,237 to 61,827
_3851
EX28DRAFT_3852: EX28DRAFT_3852 - Protein of unknown function (DUF2810), at 61,886 to 62,248
_3852
EX28DRAFT_3853: EX28DRAFT_3853 - L-lactate transport, at 62,585 to 64,240
_3853
Position (kb) 61
62 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 61.223 kb on + strand at 61.223 kb on + strand at 61.224 kb on - strand at 61.224 kb on - strand at 61.276 kb on - strand at 61.278 kb on + strand at 61.278 kb on + strand at 61.278 kb on + strand at 61.278 kb on + strand at 61.279 kb on - strand at 61.291 kb on - strand at 61.291 kb on - strand at 61.291 kb on - strand at 61.413 kb on + strand, within EX28DRAFT_3851 at 61.447 kb on + strand, within EX28DRAFT_3851 at 61.448 kb on - strand, within EX28DRAFT_3851 at 61.459 kb on + strand, within EX28DRAFT_3851 at 61.459 kb on + strand, within EX28DRAFT_3851 at 61.459 kb on + strand, within EX28DRAFT_3851 at 61.459 kb on + strand, within EX28DRAFT_3851 at 61.466 kb on + strand, within EX28DRAFT_3851 at 61.528 kb on + strand, within EX28DRAFT_3851 at 61.558 kb on + strand, within EX28DRAFT_3851 at 61.558 kb on + strand, within EX28DRAFT_3851 at 61.558 kb on + strand, within EX28DRAFT_3851 at 61.558 kb on + strand, within EX28DRAFT_3851 at 61.559 kb on - strand, within EX28DRAFT_3851 at 61.559 kb on - strand, within EX28DRAFT_3851 at 61.618 kb on + strand, within EX28DRAFT_3851 at 61.825 kb on + strand at 61.825 kb on + strand at 61.825 kb on + strand at 61.825 kb on + strand at 61.825 kb on + strand at 61.826 kb on - strand at 61.878 kb on + strand at 61.879 kb on - strand at 61.989 kb on - strand, within EX28DRAFT_3852 at 61.989 kb on - strand, within EX28DRAFT_3852 at 62.234 kb on - strand at 62.249 kb on + strand at 62.249 kb on + strand at 62.250 kb on - strand at 62.298 kb on + strand at 62.299 kb on - strand at 62.299 kb on - strand at 62.757 kb on - strand, within EX28DRAFT_3853 at 62.759 kb on - strand, within EX28DRAFT_3853 at 62.759 kb on - strand, within EX28DRAFT_3853
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 61,223 + -2.2 61,223 + -3.7 61,224 - -2.4 61,224 - +0.7 61,276 - -3.0 61,278 + -0.2 61,278 + -0.2 61,278 + -1.5 61,278 + -0.1 61,279 - -1.3 61,291 - -0.5 61,291 - -2.9 61,291 - -2.6 61,413 + EX28DRAFT_3851 0.30 -1.9 61,447 + EX28DRAFT_3851 0.36 +1.1 61,448 - EX28DRAFT_3851 0.36 -1.4 61,459 + EX28DRAFT_3851 0.38 -0.3 61,459 + EX28DRAFT_3851 0.38 -1.6 61,459 + EX28DRAFT_3851 0.38 -1.1 61,459 + EX28DRAFT_3851 0.38 -0.1 61,466 + EX28DRAFT_3851 0.39 -1.9 61,528 + EX28DRAFT_3851 0.49 -2.6 61,558 + EX28DRAFT_3851 0.54 -2.2 61,558 + EX28DRAFT_3851 0.54 -2.6 61,558 + EX28DRAFT_3851 0.54 -4.4 61,558 + EX28DRAFT_3851 0.54 -1.7 61,559 - EX28DRAFT_3851 0.54 -2.1 61,559 - EX28DRAFT_3851 0.54 -0.5 61,618 + EX28DRAFT_3851 0.64 -0.4 61,825 + -0.5 61,825 + -0.7 61,825 + -2.8 61,825 + +4.5 61,825 + -0.1 61,826 - -2.9 61,878 + -3.3 61,879 - +0.1 61,989 - EX28DRAFT_3852 0.28 -2.5 61,989 - EX28DRAFT_3852 0.28 +0.6 62,234 - -0.1 62,249 + -0.5 62,249 + -0.2 62,250 - +0.1 62,298 + +0.4 62,299 - +1.3 62,299 - -0.4 62,757 - EX28DRAFT_3853 0.10 +1.1 62,759 - EX28DRAFT_3853 0.11 +0.4 62,759 - EX28DRAFT_3853 0.11 +0.4
Or see this region's nucleotide sequence