Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3824 and EX28DRAFT_3825 are separated by 160 nucleotides EX28DRAFT_3825 and EX28DRAFT_3826 are separated by 183 nucleotides
EX28DRAFT_3824: EX28DRAFT_3824 - glycyl-tRNA synthetase alpha chain (EC 6.1.1.14), at 28,710 to 29,621
_3824
EX28DRAFT_3825: EX28DRAFT_3825 - YsaB-like lipoprotein, at 29,782 to 30,087
_3825
EX28DRAFT_3826: EX28DRAFT_3826 - Uncharacterized protein conserved in bacteria, at 30,271 to 31,266
_3826
Position (kb) 29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 29.689 kb on + strand at 29.690 kb on - strand at 29.690 kb on - strand at 29.695 kb on - strand at 29.695 kb on - strand at 29.729 kb on - strand at 29.729 kb on - strand at 29.790 kb on + strand at 29.801 kb on - strand at 29.853 kb on + strand, within EX28DRAFT_3825 at 29.854 kb on - strand, within EX28DRAFT_3825 at 29.871 kb on - strand, within EX28DRAFT_3825 at 29.871 kb on - strand, within EX28DRAFT_3825 at 30.116 kb on + strand at 30.126 kb on - strand at 30.139 kb on + strand at 30.139 kb on + strand at 30.140 kb on - strand at 30.180 kb on - strand at 30.180 kb on - strand at 30.311 kb on + strand at 30.438 kb on - strand, within EX28DRAFT_3826 at 30.478 kb on - strand, within EX28DRAFT_3826 at 30.547 kb on + strand, within EX28DRAFT_3826 at 30.547 kb on + strand, within EX28DRAFT_3826 at 30.547 kb on + strand, within EX28DRAFT_3826 at 30.547 kb on + strand, within EX28DRAFT_3826 at 30.547 kb on + strand, within EX28DRAFT_3826 at 30.547 kb on + strand, within EX28DRAFT_3826 at 30.548 kb on - strand, within EX28DRAFT_3826 at 30.548 kb on - strand, within EX28DRAFT_3826 at 30.548 kb on - strand, within EX28DRAFT_3826 at 30.550 kb on - strand, within EX28DRAFT_3826 at 30.550 kb on - strand, within EX28DRAFT_3826 at 30.592 kb on + strand, within EX28DRAFT_3826 at 30.592 kb on + strand, within EX28DRAFT_3826 at 30.593 kb on - strand, within EX28DRAFT_3826 at 30.593 kb on - strand, within EX28DRAFT_3826 at 30.648 kb on + strand, within EX28DRAFT_3826 at 30.649 kb on - strand, within EX28DRAFT_3826 at 30.652 kb on + strand, within EX28DRAFT_3826 at 30.653 kb on - strand, within EX28DRAFT_3826 at 30.653 kb on - strand, within EX28DRAFT_3826 at 30.653 kb on - strand, within EX28DRAFT_3826 at 30.793 kb on + strand, within EX28DRAFT_3826 at 30.793 kb on + strand, within EX28DRAFT_3826 at 30.794 kb on - strand, within EX28DRAFT_3826 at 30.794 kb on - strand, within EX28DRAFT_3826 at 30.814 kb on + strand, within EX28DRAFT_3826 at 30.815 kb on - strand, within EX28DRAFT_3826 at 30.817 kb on + strand, within EX28DRAFT_3826 at 30.979 kb on + strand, within EX28DRAFT_3826 at 30.985 kb on + strand, within EX28DRAFT_3826 at 31.005 kb on + strand, within EX28DRAFT_3826 at 31.006 kb on - strand, within EX28DRAFT_3826 at 31.077 kb on + strand, within EX28DRAFT_3826 at 31.078 kb on - strand, within EX28DRAFT_3826
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 29,689 + +0.3 29,690 - -0.4 29,690 - -1.5 29,695 - +1.6 29,695 - +1.5 29,729 - -0.5 29,729 - -0.1 29,790 + -0.1 29,801 - -1.3 29,853 + EX28DRAFT_3825 0.23 -1.6 29,854 - EX28DRAFT_3825 0.24 -2.1 29,871 - EX28DRAFT_3825 0.29 -0.7 29,871 - EX28DRAFT_3825 0.29 -0.6 30,116 + +1.2 30,126 - +0.2 30,139 + +0.5 30,139 + +0.4 30,140 - -0.4 30,180 - +4.5 30,180 - +1.3 30,311 + +0.9 30,438 - EX28DRAFT_3826 0.17 +0.8 30,478 - EX28DRAFT_3826 0.21 -1.1 30,547 + EX28DRAFT_3826 0.28 +2.6 30,547 + EX28DRAFT_3826 0.28 +1.1 30,547 + EX28DRAFT_3826 0.28 -0.1 30,547 + EX28DRAFT_3826 0.28 -1.9 30,547 + EX28DRAFT_3826 0.28 -3.4 30,547 + EX28DRAFT_3826 0.28 -0.1 30,548 - EX28DRAFT_3826 0.28 +0.1 30,548 - EX28DRAFT_3826 0.28 -0.5 30,548 - EX28DRAFT_3826 0.28 +1.1 30,550 - EX28DRAFT_3826 0.28 +0.3 30,550 - EX28DRAFT_3826 0.28 +0.2 30,592 + EX28DRAFT_3826 0.32 -1.3 30,592 + EX28DRAFT_3826 0.32 +0.9 30,593 - EX28DRAFT_3826 0.32 +0.5 30,593 - EX28DRAFT_3826 0.32 -1.0 30,648 + EX28DRAFT_3826 0.38 +0.1 30,649 - EX28DRAFT_3826 0.38 -0.5 30,652 + EX28DRAFT_3826 0.38 -3.7 30,653 - EX28DRAFT_3826 0.38 +0.5 30,653 - EX28DRAFT_3826 0.38 +0.4 30,653 - EX28DRAFT_3826 0.38 -0.2 30,793 + EX28DRAFT_3826 0.52 +1.0 30,793 + EX28DRAFT_3826 0.52 +0.5 30,794 - EX28DRAFT_3826 0.53 +2.5 30,794 - EX28DRAFT_3826 0.53 +0.5 30,814 + EX28DRAFT_3826 0.55 -2.9 30,815 - EX28DRAFT_3826 0.55 +1.1 30,817 + EX28DRAFT_3826 0.55 -0.2 30,979 + EX28DRAFT_3826 0.71 -2.1 30,985 + EX28DRAFT_3826 0.72 -1.0 31,005 + EX28DRAFT_3826 0.74 +0.9 31,006 - EX28DRAFT_3826 0.74 +0.6 31,077 + EX28DRAFT_3826 0.81 +1.5 31,078 - EX28DRAFT_3826 0.81 +2.1
Or see this region's nucleotide sequence