Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3787 and EX28DRAFT_3788 are separated by 188 nucleotides
EX28DRAFT_3787: EX28DRAFT_3787 - D-methionine ABC transporter, ATP-binding protein, at 468,050 to 469,081
_3787
EX28DRAFT_3788: EX28DRAFT_3788 - D,D-heptose 1,7-bisphosphate phosphatase, at 469,270 to 469,836
_3788
Position (kb) 469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 468.407 kb on + strand, within EX28DRAFT_3787 at 468.408 kb on - strand, within EX28DRAFT_3787 at 468.490 kb on + strand, within EX28DRAFT_3787 at 468.490 kb on + strand, within EX28DRAFT_3787 at 468.491 kb on - strand, within EX28DRAFT_3787 at 468.491 kb on - strand, within EX28DRAFT_3787 at 468.491 kb on - strand, within EX28DRAFT_3787 at 468.491 kb on - strand, within EX28DRAFT_3787 at 468.493 kb on + strand, within EX28DRAFT_3787 at 468.493 kb on + strand, within EX28DRAFT_3787 at 468.494 kb on - strand, within EX28DRAFT_3787 at 468.599 kb on + strand, within EX28DRAFT_3787 at 468.676 kb on + strand, within EX28DRAFT_3787 at 468.896 kb on + strand, within EX28DRAFT_3787 at 468.952 kb on + strand, within EX28DRAFT_3787 at 468.953 kb on - strand, within EX28DRAFT_3787 at 469.087 kb on + strand at 469.098 kb on + strand at 469.098 kb on + strand at 469.098 kb on + strand at 469.099 kb on - strand at 469.099 kb on - strand at 469.107 kb on + strand at 469.182 kb on - strand at 469.377 kb on - strand, within EX28DRAFT_3788 at 469.819 kb on - strand at 469.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 468,407 + EX28DRAFT_3787 0.35 +0.2 468,408 - EX28DRAFT_3787 0.35 +2.4 468,490 + EX28DRAFT_3787 0.43 -1.0 468,490 + EX28DRAFT_3787 0.43 -1.7 468,491 - EX28DRAFT_3787 0.43 +0.1 468,491 - EX28DRAFT_3787 0.43 +1.4 468,491 - EX28DRAFT_3787 0.43 +0.4 468,491 - EX28DRAFT_3787 0.43 +1.0 468,493 + EX28DRAFT_3787 0.43 +1.8 468,493 + EX28DRAFT_3787 0.43 -1.2 468,494 - EX28DRAFT_3787 0.43 -0.0 468,599 + EX28DRAFT_3787 0.53 -0.1 468,676 + EX28DRAFT_3787 0.61 -0.3 468,896 + EX28DRAFT_3787 0.82 -0.7 468,952 + EX28DRAFT_3787 0.87 +1.8 468,953 - EX28DRAFT_3787 0.88 -0.7 469,087 + +2.1 469,098 + +1.1 469,098 + +0.3 469,098 + +3.3 469,099 - -0.5 469,099 - -0.1 469,107 + -0.1 469,182 - -2.9 469,377 - EX28DRAFT_3788 0.19 -1.3 469,819 - -2.4 469,911 - -0.5
Or see this region's nucleotide sequence