Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3652

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3651 and EX28DRAFT_3652 are separated by 128 nucleotidesEX28DRAFT_3652 and EX28DRAFT_3653 are separated by 74 nucleotidesEX28DRAFT_3653 and EX28DRAFT_3654 are separated by 47 nucleotides EX28DRAFT_3651: EX28DRAFT_3651 - Superfamily II DNA/RNA helicases, SNF2 family, at 313,813 to 316,719 _3651 EX28DRAFT_3652: EX28DRAFT_3652 - DNA polymerase elongation subunit (family B), at 316,848 to 319,205 _3652 EX28DRAFT_3653: EX28DRAFT_3653 - L-ribulose-5-phosphate 4-epimerase, at 319,280 to 319,975 _3653 EX28DRAFT_3654: EX28DRAFT_3654 - L-arabinose isomerase, at 320,023 to 321,525 _3654 Position (kb) 316 317 318 319 320Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 316.173 kb on + strand, within EX28DRAFT_3651at 316.473 kb on - strandat 316.473 kb on - strandat 316.593 kb on - strandat 316.593 kb on - strandat 316.651 kb on + strandat 316.710 kb on + strandat 316.711 kb on - strandat 316.719 kb on + strandat 316.719 kb on + strandat 316.719 kb on + strandat 316.720 kb on - strandat 316.740 kb on + strandat 316.740 kb on + strandat 316.753 kb on + strandat 316.753 kb on + strandat 316.876 kb on - strandat 316.880 kb on + strandat 316.945 kb on + strandat 316.946 kb on - strandat 317.011 kb on + strandat 317.011 kb on + strandat 317.016 kb on - strandat 317.059 kb on - strandat 317.092 kb on - strand, within EX28DRAFT_3652at 317.149 kb on + strand, within EX28DRAFT_3652at 317.149 kb on + strand, within EX28DRAFT_3652at 317.207 kb on - strand, within EX28DRAFT_3652at 317.242 kb on + strand, within EX28DRAFT_3652at 317.306 kb on + strand, within EX28DRAFT_3652at 317.394 kb on + strand, within EX28DRAFT_3652at 317.573 kb on - strand, within EX28DRAFT_3652at 317.965 kb on + strand, within EX28DRAFT_3652at 317.965 kb on + strand, within EX28DRAFT_3652at 317.965 kb on + strand, within EX28DRAFT_3652at 317.965 kb on + strand, within EX28DRAFT_3652at 317.966 kb on - strand, within EX28DRAFT_3652at 317.966 kb on - strand, within EX28DRAFT_3652at 317.966 kb on - strand, within EX28DRAFT_3652at 317.992 kb on + strand, within EX28DRAFT_3652at 318.071 kb on - strand, within EX28DRAFT_3652at 318.156 kb on - strand, within EX28DRAFT_3652at 318.208 kb on + strand, within EX28DRAFT_3652at 318.208 kb on + strand, within EX28DRAFT_3652at 318.209 kb on - strand, within EX28DRAFT_3652at 318.209 kb on - strand, within EX28DRAFT_3652at 318.209 kb on - strand, within EX28DRAFT_3652at 318.209 kb on - strand, within EX28DRAFT_3652at 318.209 kb on - strand, within EX28DRAFT_3652at 318.209 kb on - strand, within EX28DRAFT_3652at 318.228 kb on - strand, within EX28DRAFT_3652at 318.237 kb on - strand, within EX28DRAFT_3652at 318.288 kb on - strand, within EX28DRAFT_3652at 318.420 kb on - strand, within EX28DRAFT_3652at 318.556 kb on + strand, within EX28DRAFT_3652at 318.575 kb on + strand, within EX28DRAFT_3652at 318.610 kb on + strand, within EX28DRAFT_3652at 318.662 kb on + strand, within EX28DRAFT_3652at 318.663 kb on - strand, within EX28DRAFT_3652at 318.663 kb on - strand, within EX28DRAFT_3652at 318.664 kb on + strand, within EX28DRAFT_3652at 318.664 kb on + strand, within EX28DRAFT_3652at 318.664 kb on + strand, within EX28DRAFT_3652at 318.664 kb on + strand, within EX28DRAFT_3652at 318.664 kb on + strand, within EX28DRAFT_3652at 318.665 kb on - strand, within EX28DRAFT_3652at 318.665 kb on - strand, within EX28DRAFT_3652at 318.665 kb on - strand, within EX28DRAFT_3652at 318.665 kb on - strand, within EX28DRAFT_3652at 318.665 kb on - strand, within EX28DRAFT_3652at 318.665 kb on - strand, within EX28DRAFT_3652at 318.665 kb on - strand, within EX28DRAFT_3652at 318.703 kb on + strand, within EX28DRAFT_3652at 318.764 kb on - strand, within EX28DRAFT_3652at 318.956 kb on - strand, within EX28DRAFT_3652at 318.956 kb on - strand, within EX28DRAFT_3652at 319.179 kb on + strandat 319.211 kb on + strandat 319.255 kb on - strandat 319.260 kb on - strandat 319.269 kb on - strandat 319.270 kb on + strandat 319.270 kb on + strandat 319.271 kb on - strandat 319.272 kb on + strandat 319.272 kb on + strandat 319.273 kb on - strandat 319.275 kb on - strandat 319.294 kb on - strandat 319.320 kb on + strandat 319.392 kb on + strand, within EX28DRAFT_3653at 319.393 kb on - strand, within EX28DRAFT_3653at 319.393 kb on - strand, within EX28DRAFT_3653at 319.393 kb on - strand, within EX28DRAFT_3653at 319.393 kb on - strand, within EX28DRAFT_3653at 319.444 kb on + strand, within EX28DRAFT_3653at 319.608 kb on + strand, within EX28DRAFT_3653at 319.609 kb on - strand, within EX28DRAFT_3653at 319.769 kb on - strand, within EX28DRAFT_3653at 319.919 kb on - strandat 319.970 kb on + strandat 319.971 kb on - strandat 319.971 kb on - strandat 320.020 kb on + strandat 320.021 kb on - strandat 320.024 kb on + strandat 320.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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316,173 + EX28DRAFT_3651 0.81 -0.0
316,473 - -1.3
316,473 - -2.7
316,593 - -1.8
316,593 - +2.0
316,651 + -0.5
316,710 + +0.4
316,711 - +0.4
316,719 + -0.8
316,719 + -3.3
316,719 + -1.1
316,720 - +0.3
316,740 + -1.8
316,740 + -0.7
316,753 + +1.5
316,753 + -1.2
316,876 - -1.5
316,880 + -1.9
316,945 + +0.2
316,946 - +0.0
317,011 + -3.0
317,011 + +1.2
317,016 - +1.4
317,059 - -1.8
317,092 - EX28DRAFT_3652 0.10 +0.6
317,149 + EX28DRAFT_3652 0.13 +0.1
317,149 + EX28DRAFT_3652 0.13 +0.4
317,207 - EX28DRAFT_3652 0.15 -1.6
317,242 + EX28DRAFT_3652 0.17 -1.6
317,306 + EX28DRAFT_3652 0.19 -0.1
317,394 + EX28DRAFT_3652 0.23 +0.8
317,573 - EX28DRAFT_3652 0.31 +0.2
317,965 + EX28DRAFT_3652 0.47 -1.1
317,965 + EX28DRAFT_3652 0.47 -1.8
317,965 + EX28DRAFT_3652 0.47 +1.3
317,965 + EX28DRAFT_3652 0.47 +1.0
317,966 - EX28DRAFT_3652 0.47 -0.8
317,966 - EX28DRAFT_3652 0.47 -0.4
317,966 - EX28DRAFT_3652 0.47 +2.9
317,992 + EX28DRAFT_3652 0.49 +0.9
318,071 - EX28DRAFT_3652 0.52 -0.3
318,156 - EX28DRAFT_3652 0.55 -0.7
318,208 + EX28DRAFT_3652 0.58 +0.1
318,208 + EX28DRAFT_3652 0.58 +1.2
318,209 - EX28DRAFT_3652 0.58 +0.8
318,209 - EX28DRAFT_3652 0.58 +1.2
318,209 - EX28DRAFT_3652 0.58 -0.4
318,209 - EX28DRAFT_3652 0.58 -0.2
318,209 - EX28DRAFT_3652 0.58 -0.7
318,209 - EX28DRAFT_3652 0.58 +0.2
318,228 - EX28DRAFT_3652 0.59 +0.1
318,237 - EX28DRAFT_3652 0.59 -1.4
318,288 - EX28DRAFT_3652 0.61 -0.8
318,420 - EX28DRAFT_3652 0.67 -2.4
318,556 + EX28DRAFT_3652 0.72 -1.4
318,575 + EX28DRAFT_3652 0.73 -2.9
318,610 + EX28DRAFT_3652 0.75 -1.3
318,662 + EX28DRAFT_3652 0.77 -0.3
318,663 - EX28DRAFT_3652 0.77 -0.2
318,663 - EX28DRAFT_3652 0.77 +1.8
318,664 + EX28DRAFT_3652 0.77 -0.5
318,664 + EX28DRAFT_3652 0.77 +0.4
318,664 + EX28DRAFT_3652 0.77 -0.1
318,664 + EX28DRAFT_3652 0.77 +0.3
318,664 + EX28DRAFT_3652 0.77 +0.4
318,665 - EX28DRAFT_3652 0.77 +0.2
318,665 - EX28DRAFT_3652 0.77 +0.7
318,665 - EX28DRAFT_3652 0.77 +0.7
318,665 - EX28DRAFT_3652 0.77 +0.5
318,665 - EX28DRAFT_3652 0.77 +0.2
318,665 - EX28DRAFT_3652 0.77 -0.2
318,665 - EX28DRAFT_3652 0.77 -0.2
318,703 + EX28DRAFT_3652 0.79 -0.0
318,764 - EX28DRAFT_3652 0.81 -1.3
318,956 - EX28DRAFT_3652 0.89 +0.6
318,956 - EX28DRAFT_3652 0.89 -1.8
319,179 + +0.8
319,211 + -1.5
319,255 - +0.6
319,260 - -0.2
319,269 - -0.0
319,270 + +0.6
319,270 + +0.7
319,271 - -0.4
319,272 + +0.9
319,272 + +1.5
319,273 - +0.2
319,275 - +0.6
319,294 - -1.3
319,320 + +0.1
319,392 + EX28DRAFT_3653 0.16 +0.8
319,393 - EX28DRAFT_3653 0.16 -1.8
319,393 - EX28DRAFT_3653 0.16 +2.2
319,393 - EX28DRAFT_3653 0.16 +0.8
319,393 - EX28DRAFT_3653 0.16 -0.9
319,444 + EX28DRAFT_3653 0.24 +0.5
319,608 + EX28DRAFT_3653 0.47 -0.5
319,609 - EX28DRAFT_3653 0.47 -0.7
319,769 - EX28DRAFT_3653 0.70 -2.9
319,919 - +3.1
319,970 + -0.1
319,971 - -1.2
319,971 - -0.2
320,020 + +0.3
320,021 - +0.1
320,024 + -0.3
320,025 - +4.6

Or see this region's nucleotide sequence