Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3643 and EX28DRAFT_3644 are separated by 4 nucleotides EX28DRAFT_3644 and EX28DRAFT_3645 are separated by 3 nucleotides EX28DRAFT_3645 and EX28DRAFT_3646 overlap by 4 nucleotides EX28DRAFT_3646 and EX28DRAFT_3647 overlap by 1 nucleotides
EX28DRAFT_3643: EX28DRAFT_3643 - Bis(5'nucleosyl)-tetraphosphatase, ApaH, at 305,326 to 306,174
_3643
EX28DRAFT_3644: EX28DRAFT_3644 - Uncharacterized protein affecting Mg2+/Co2+ transport, at 306,179 to 306,556
_3644
EX28DRAFT_3645: EX28DRAFT_3645 - ribosomal RNA small subunit methyltransferase A, at 306,560 to 307,381
_3645
EX28DRAFT_3646: EX28DRAFT_3646 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 307,378 to 308,364
_3646
EX28DRAFT_3647: EX28DRAFT_3647 - periplasmic chaperone for outer membrane proteins SurA, at 308,364 to 309,650
_3647
Position (kb) 306
307
308 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 305.600 kb on - strand, within EX28DRAFT_3643 at 305.877 kb on + strand, within EX28DRAFT_3643 at 306.028 kb on + strand, within EX28DRAFT_3643 at 306.165 kb on - strand at 306.165 kb on - strand at 306.168 kb on + strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.313 kb on - strand, within EX28DRAFT_3644 at 306.313 kb on - strand, within EX28DRAFT_3644 at 306.318 kb on + strand, within EX28DRAFT_3644 at 306.465 kb on + strand, within EX28DRAFT_3644 at 306.514 kb on - strand, within EX28DRAFT_3644 at 306.524 kb on + strand at 306.525 kb on - strand at 306.537 kb on - strand at 306.561 kb on + strand at 306.886 kb on - strand, within EX28DRAFT_3645 at 306.886 kb on - strand, within EX28DRAFT_3645 at 306.995 kb on - strand, within EX28DRAFT_3645 at 306.997 kb on - strand, within EX28DRAFT_3645 at 307.389 kb on + strand at 307.423 kb on - strand at 307.423 kb on - strand at 307.575 kb on - strand, within EX28DRAFT_3646 at 307.575 kb on - strand, within EX28DRAFT_3646 at 308.081 kb on + strand, within EX28DRAFT_3646 at 308.081 kb on + strand, within EX28DRAFT_3646 at 308.081 kb on + strand, within EX28DRAFT_3646 at 308.082 kb on - strand, within EX28DRAFT_3646 at 308.207 kb on - strand, within EX28DRAFT_3646
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 305,600 - EX28DRAFT_3643 0.32 -2.0 305,877 + EX28DRAFT_3643 0.65 -2.7 306,028 + EX28DRAFT_3643 0.83 -5.0 306,165 - +0.0 306,165 - -2.4 306,168 + -1.1 306,169 - -3.1 306,169 - -0.8 306,169 - -1.1 306,169 - +0.4 306,169 - -3.5 306,169 - -3.3 306,313 - EX28DRAFT_3644 0.35 -0.3 306,313 - EX28DRAFT_3644 0.35 +0.9 306,318 + EX28DRAFT_3644 0.37 -2.2 306,465 + EX28DRAFT_3644 0.76 -2.8 306,514 - EX28DRAFT_3644 0.89 -1.0 306,524 + -1.0 306,525 - +0.2 306,537 - +4.7 306,561 + -1.6 306,886 - EX28DRAFT_3645 0.40 -3.0 306,886 - EX28DRAFT_3645 0.40 -2.5 306,995 - EX28DRAFT_3645 0.53 -1.1 306,997 - EX28DRAFT_3645 0.53 -0.5 307,389 + +0.0 307,423 - +1.5 307,423 - -1.6 307,575 - EX28DRAFT_3646 0.20 +1.2 307,575 - EX28DRAFT_3646 0.20 -1.0 308,081 + EX28DRAFT_3646 0.71 -0.9 308,081 + EX28DRAFT_3646 0.71 +0.2 308,081 + EX28DRAFT_3646 0.71 -1.7 308,082 - EX28DRAFT_3646 0.71 +5.4 308,207 - EX28DRAFT_3646 0.84 +0.9
Or see this region's nucleotide sequence