Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3566

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3564 and EX28DRAFT_3565 are separated by 41 nucleotidesEX28DRAFT_3565 and EX28DRAFT_3566 are separated by 67 nucleotidesEX28DRAFT_3566 and EX28DRAFT_3567 overlap by 10 nucleotides EX28DRAFT_3564: EX28DRAFT_3564 - Transcriptional regulators, at 227,590 to 228,042 _3564 EX28DRAFT_3565: EX28DRAFT_3565 - transcriptional regulator, TetR family, at 228,084 to 228,725 _3565 EX28DRAFT_3566: EX28DRAFT_3566 - Uncharacterized conserved protein, at 228,793 to 229,266 _3566 EX28DRAFT_3567: EX28DRAFT_3567 - Uncharacterized conserved protein, at 229,257 to 230,033 _3567 Position (kb) 228 229 230Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 227.904 kb on - strand, within EX28DRAFT_3564at 227.976 kb on - strand, within EX28DRAFT_3564at 228.187 kb on + strand, within EX28DRAFT_3565at 228.203 kb on - strand, within EX28DRAFT_3565at 228.203 kb on - strand, within EX28DRAFT_3565at 228.222 kb on + strand, within EX28DRAFT_3565at 228.222 kb on + strand, within EX28DRAFT_3565at 228.222 kb on + strand, within EX28DRAFT_3565at 228.353 kb on + strand, within EX28DRAFT_3565at 228.397 kb on + strand, within EX28DRAFT_3565at 228.398 kb on - strand, within EX28DRAFT_3565at 228.398 kb on - strand, within EX28DRAFT_3565at 228.549 kb on - strand, within EX28DRAFT_3565at 228.554 kb on + strand, within EX28DRAFT_3565at 228.631 kb on + strand, within EX28DRAFT_3565at 228.783 kb on - strandat 228.783 kb on - strandat 228.791 kb on + strandat 228.792 kb on - strandat 228.792 kb on - strandat 229.074 kb on + strand, within EX28DRAFT_3566at 229.095 kb on + strand, within EX28DRAFT_3566at 229.296 kb on + strandat 229.299 kb on + strandat 229.299 kb on + strandat 229.373 kb on + strand, within EX28DRAFT_3567at 229.374 kb on - strand, within EX28DRAFT_3567at 229.527 kb on - strand, within EX28DRAFT_3567at 229.570 kb on + strand, within EX28DRAFT_3567at 229.570 kb on + strand, within EX28DRAFT_3567at 229.571 kb on - strand, within EX28DRAFT_3567at 229.571 kb on - strand, within EX28DRAFT_3567at 229.571 kb on - strand, within EX28DRAFT_3567at 229.571 kb on - strand, within EX28DRAFT_3567at 229.571 kb on - strand, within EX28DRAFT_3567at 229.571 kb on - strand, within EX28DRAFT_3567at 229.626 kb on - strand, within EX28DRAFT_3567at 229.634 kb on + strand, within EX28DRAFT_3567at 229.660 kb on - strand, within EX28DRAFT_3567at 229.660 kb on - strand, within EX28DRAFT_3567at 229.692 kb on + strand, within EX28DRAFT_3567at 229.693 kb on - strand, within EX28DRAFT_3567at 229.745 kb on + strand, within EX28DRAFT_3567at 229.746 kb on - strand, within EX28DRAFT_3567at 229.746 kb on - strand, within EX28DRAFT_3567at 229.746 kb on - strand, within EX28DRAFT_3567at 229.881 kb on - strand, within EX28DRAFT_3567at 229.988 kb on + strandat 229.989 kb on - strandat 229.992 kb on + strandat 229.993 kb on - strandat 229.993 kb on - strandat 230.003 kb on + strandat 230.035 kb on + strandat 230.035 kb on + strandat 230.035 kb on + strandat 230.035 kb on + strandat 230.035 kb on + strandat 230.036 kb on - strandat 230.036 kb on - strandat 230.081 kb on + strandat 230.152 kb on + strandat 230.153 kb on - strandat 230.198 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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227,904 - EX28DRAFT_3564 0.69 -0.6
227,976 - EX28DRAFT_3564 0.85 -3.0
228,187 + EX28DRAFT_3565 0.16 -2.6
228,203 - EX28DRAFT_3565 0.19 -0.7
228,203 - EX28DRAFT_3565 0.19 -2.0
228,222 + EX28DRAFT_3565 0.21 -0.7
228,222 + EX28DRAFT_3565 0.21 -1.9
228,222 + EX28DRAFT_3565 0.21 -0.7
228,353 + EX28DRAFT_3565 0.42 -0.5
228,397 + EX28DRAFT_3565 0.49 -2.0
228,398 - EX28DRAFT_3565 0.49 -1.9
228,398 - EX28DRAFT_3565 0.49 -0.8
228,549 - EX28DRAFT_3565 0.72 +1.9
228,554 + EX28DRAFT_3565 0.73 +0.6
228,631 + EX28DRAFT_3565 0.85 +0.4
228,783 - +1.3
228,783 - +0.9
228,791 + -0.4
228,792 - -0.2
228,792 - -1.7
229,074 + EX28DRAFT_3566 0.59 -0.9
229,095 + EX28DRAFT_3566 0.64 -1.6
229,296 + -2.4
229,299 + -0.3
229,299 + +0.5
229,373 + EX28DRAFT_3567 0.15 +0.1
229,374 - EX28DRAFT_3567 0.15 +0.1
229,527 - EX28DRAFT_3567 0.35 +0.3
229,570 + EX28DRAFT_3567 0.40 +0.5
229,570 + EX28DRAFT_3567 0.40 +0.9
229,571 - EX28DRAFT_3567 0.40 +2.2
229,571 - EX28DRAFT_3567 0.40 +1.5
229,571 - EX28DRAFT_3567 0.40 +0.2
229,571 - EX28DRAFT_3567 0.40 -4.9
229,571 - EX28DRAFT_3567 0.40 +0.5
229,571 - EX28DRAFT_3567 0.40 +0.5
229,626 - EX28DRAFT_3567 0.47 -0.3
229,634 + EX28DRAFT_3567 0.49 -0.4
229,660 - EX28DRAFT_3567 0.52 -0.3
229,660 - EX28DRAFT_3567 0.52 +1.1
229,692 + EX28DRAFT_3567 0.56 +1.7
229,693 - EX28DRAFT_3567 0.56 +0.7
229,745 + EX28DRAFT_3567 0.63 -1.6
229,746 - EX28DRAFT_3567 0.63 -2.7
229,746 - EX28DRAFT_3567 0.63 +0.1
229,746 - EX28DRAFT_3567 0.63 +1.5
229,881 - EX28DRAFT_3567 0.80 -1.5
229,988 + +0.4
229,989 - -4.3
229,992 + +0.6
229,993 - +1.6
229,993 - +1.0
230,003 + -0.4
230,035 + +1.1
230,035 + -0.4
230,035 + -1.4
230,035 + -1.2
230,035 + +0.1
230,036 - -0.2
230,036 - +1.4
230,081 + -0.4
230,152 + -0.3
230,153 - -0.3
230,198 - +0.0

Or see this region's nucleotide sequence