Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3489 and EX28DRAFT_3490 are separated by 300 nucleotides EX28DRAFT_3490 and EX28DRAFT_3491 are separated by 44 nucleotides EX28DRAFT_3491 and EX28DRAFT_3492 are separated by 199 nucleotides EX28DRAFT_3492 and EX28DRAFT_3493 overlap by 15 nucleotides
EX28DRAFT_3489: EX28DRAFT_3489 - Predicted restriction endonuclease, at 152,409 to 153,278
_3489
EX28DRAFT_3490: EX28DRAFT_3490 - Toxin SymE, type I toxin-antitoxin system, at 153,579 to 154,034
_3490
EX28DRAFT_3491: EX28DRAFT_3491 - tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 154,079 to 155,080
_3491
EX28DRAFT_3492: EX28DRAFT_3492 - Lactoylglutathione lyase and related lyases, at 155,280 to 155,705
_3492
EX28DRAFT_3493: EX28DRAFT_3493 - Transcriptional regulators, at 155,691 to 156,698
_3493
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 153.107 kb on + strand, within EX28DRAFT_3489 at 153.301 kb on - strand at 153.301 kb on - strand at 153.431 kb on - strand at 153.435 kb on - strand at 153.451 kb on - strand at 153.488 kb on + strand at 153.489 kb on - strand at 153.781 kb on + strand, within EX28DRAFT_3490 at 153.792 kb on + strand, within EX28DRAFT_3490 at 153.792 kb on + strand, within EX28DRAFT_3490 at 153.803 kb on - strand, within EX28DRAFT_3490 at 153.896 kb on + strand, within EX28DRAFT_3490 at 153.897 kb on - strand, within EX28DRAFT_3490 at 153.897 kb on - strand, within EX28DRAFT_3490 at 153.897 kb on - strand, within EX28DRAFT_3490 at 153.926 kb on + strand, within EX28DRAFT_3490 at 153.927 kb on - strand, within EX28DRAFT_3490 at 153.942 kb on - strand, within EX28DRAFT_3490 at 153.943 kb on + strand, within EX28DRAFT_3490 at 153.947 kb on + strand, within EX28DRAFT_3490 at 153.948 kb on - strand, within EX28DRAFT_3490 at 154.007 kb on + strand at 154.039 kb on + strand at 154.040 kb on - strand at 154.068 kb on + strand at 154.068 kb on + strand at 154.197 kb on + strand, within EX28DRAFT_3491 at 154.197 kb on + strand, within EX28DRAFT_3491 at 154.197 kb on + strand, within EX28DRAFT_3491 at 154.197 kb on + strand, within EX28DRAFT_3491 at 154.197 kb on + strand, within EX28DRAFT_3491 at 154.197 kb on + strand, within EX28DRAFT_3491 at 154.197 kb on + strand, within EX28DRAFT_3491 at 154.198 kb on - strand, within EX28DRAFT_3491 at 154.198 kb on - strand, within EX28DRAFT_3491 at 154.198 kb on - strand, within EX28DRAFT_3491 at 154.198 kb on - strand, within EX28DRAFT_3491 at 154.347 kb on + strand, within EX28DRAFT_3491 at 154.351 kb on + strand, within EX28DRAFT_3491 at 154.352 kb on - strand, within EX28DRAFT_3491 at 154.414 kb on - strand, within EX28DRAFT_3491 at 154.696 kb on + strand, within EX28DRAFT_3491 at 154.696 kb on + strand, within EX28DRAFT_3491 at 154.697 kb on - strand, within EX28DRAFT_3491 at 154.792 kb on + strand, within EX28DRAFT_3491 at 154.792 kb on + strand, within EX28DRAFT_3491 at 154.792 kb on + strand, within EX28DRAFT_3491 at 154.793 kb on - strand, within EX28DRAFT_3491 at 154.794 kb on + strand, within EX28DRAFT_3491 at 154.795 kb on - strand, within EX28DRAFT_3491 at 154.795 kb on - strand, within EX28DRAFT_3491 at 154.795 kb on - strand, within EX28DRAFT_3491 at 155.092 kb on - strand at 155.226 kb on + strand at 155.227 kb on - strand at 155.227 kb on - strand at 155.394 kb on + strand, within EX28DRAFT_3492 at 155.394 kb on + strand, within EX28DRAFT_3492 at 155.448 kb on + strand, within EX28DRAFT_3492 at 155.449 kb on - strand, within EX28DRAFT_3492 at 155.473 kb on - strand, within EX28DRAFT_3492 at 155.490 kb on - strand, within EX28DRAFT_3492 at 155.687 kb on + strand at 155.687 kb on + strand at 155.687 kb on + strand at 155.713 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 153,107 + EX28DRAFT_3489 0.80 +2.0 153,301 - -1.2 153,301 - -0.5 153,431 - +1.7 153,435 - +1.6 153,451 - +2.0 153,488 + +0.1 153,489 - +0.2 153,781 + EX28DRAFT_3490 0.44 -1.2 153,792 + EX28DRAFT_3490 0.47 +0.3 153,792 + EX28DRAFT_3490 0.47 -0.2 153,803 - EX28DRAFT_3490 0.49 -0.4 153,896 + EX28DRAFT_3490 0.70 -0.3 153,897 - EX28DRAFT_3490 0.70 +1.5 153,897 - EX28DRAFT_3490 0.70 +0.7 153,897 - EX28DRAFT_3490 0.70 +1.0 153,926 + EX28DRAFT_3490 0.76 -0.1 153,927 - EX28DRAFT_3490 0.76 +0.3 153,942 - EX28DRAFT_3490 0.80 -1.9 153,943 + EX28DRAFT_3490 0.80 +0.3 153,947 + EX28DRAFT_3490 0.81 +1.9 153,948 - EX28DRAFT_3490 0.81 +0.3 154,007 + +1.3 154,039 + -1.4 154,040 - +0.2 154,068 + -0.9 154,068 + -0.3 154,197 + EX28DRAFT_3491 0.12 +0.6 154,197 + EX28DRAFT_3491 0.12 +1.5 154,197 + EX28DRAFT_3491 0.12 -3.1 154,197 + EX28DRAFT_3491 0.12 -0.7 154,197 + EX28DRAFT_3491 0.12 +1.8 154,197 + EX28DRAFT_3491 0.12 +0.5 154,197 + EX28DRAFT_3491 0.12 +0.6 154,198 - EX28DRAFT_3491 0.12 +1.4 154,198 - EX28DRAFT_3491 0.12 +0.6 154,198 - EX28DRAFT_3491 0.12 -2.8 154,198 - EX28DRAFT_3491 0.12 +1.1 154,347 + EX28DRAFT_3491 0.27 -0.3 154,351 + EX28DRAFT_3491 0.27 +1.2 154,352 - EX28DRAFT_3491 0.27 +1.1 154,414 - EX28DRAFT_3491 0.33 -1.1 154,696 + EX28DRAFT_3491 0.62 +0.1 154,696 + EX28DRAFT_3491 0.62 +0.6 154,697 - EX28DRAFT_3491 0.62 -2.1 154,792 + EX28DRAFT_3491 0.71 +0.9 154,792 + EX28DRAFT_3491 0.71 +0.2 154,792 + EX28DRAFT_3491 0.71 -0.3 154,793 - EX28DRAFT_3491 0.71 -1.2 154,794 + EX28DRAFT_3491 0.71 -0.4 154,795 - EX28DRAFT_3491 0.71 -0.1 154,795 - EX28DRAFT_3491 0.71 -0.6 154,795 - EX28DRAFT_3491 0.71 -2.2 155,092 - +2.7 155,226 + +1.4 155,227 - -1.0 155,227 - -0.1 155,394 + EX28DRAFT_3492 0.27 +1.4 155,394 + EX28DRAFT_3492 0.27 -1.4 155,448 + EX28DRAFT_3492 0.39 -1.0 155,449 - EX28DRAFT_3492 0.40 -0.1 155,473 - EX28DRAFT_3492 0.45 +0.6 155,490 - EX28DRAFT_3492 0.49 +1.0 155,687 + -0.5 155,687 + +2.1 155,687 + -0.6 155,713 - +3.7
Or see this region's nucleotide sequence