Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3385 and EX28DRAFT_3386 are separated by 6 nucleotides EX28DRAFT_3386 and EX28DRAFT_3387 are separated by 4 nucleotides EX28DRAFT_3387 and EX28DRAFT_3388 are separated by 41 nucleotides EX28DRAFT_3388 and EX28DRAFT_3389 are separated by 67 nucleotides
EX28DRAFT_3385: EX28DRAFT_3385 - ribosomal protein S6, at 54,828 to 55,223
_3385
EX28DRAFT_3386: EX28DRAFT_3386 - restart primosome assembly protein PriB, at 55,230 to 55,544
_3386
EX28DRAFT_3387: EX28DRAFT_3387 - SSU ribosomal protein S18P, at 55,549 to 55,776
_3387
EX28DRAFT_3388: EX28DRAFT_3388 - ribosomal protein L9, at 55,818 to 56,267
_3388
EX28DRAFT_3389: EX28DRAFT_3389 - Cell envelope opacity-associated protein A, at 56,335 to 56,979
_3389
Position (kb) 55
56 Strain fitness (log2 ratio) -1
0
1
2 at 54.557 kb on - strand at 54.563 kb on + strand at 54.563 kb on + strand at 54.645 kb on - strand at 54.658 kb on - strand at 54.658 kb on - strand at 54.684 kb on + strand at 54.685 kb on - strand at 56.321 kb on + strand at 56.513 kb on + strand, within EX28DRAFT_3389
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 54,557 - +0.8 54,563 + +1.0 54,563 + +2.0 54,645 - -0.1 54,658 - -1.4 54,658 - +0.7 54,684 + -0.6 54,685 - +1.1 56,321 + -0.4 56,513 + EX28DRAFT_3389 0.28 +0.2
Or see this region's nucleotide sequence