Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3379 and EX28DRAFT_3380 overlap by 4 nucleotides EX28DRAFT_3380 and EX28DRAFT_3381 are separated by 172 nucleotides EX28DRAFT_3381 and EX28DRAFT_3382 are separated by 148 nucleotides
EX28DRAFT_3379: EX28DRAFT_3379 - Acyl-CoA dehydrogenases, at 48,705 to 50,327
_3379
EX28DRAFT_3380: EX28DRAFT_3380 - Methyl-accepting chemotaxis protein, at 50,324 to 52,255
_3380
EX28DRAFT_3381: EX28DRAFT_3381 - Protein of unknown function (DUF1471), at 52,428 to 52,703
_3381
EX28DRAFT_3382: EX28DRAFT_3382 - Protein of unknown function (DUF1471), at 52,852 to 53,160
_3382
Position (kb) 50
51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 49.327 kb on - strand, within EX28DRAFT_3379 at 49.343 kb on + strand, within EX28DRAFT_3379 at 49.343 kb on + strand, within EX28DRAFT_3379 at 49.659 kb on + strand, within EX28DRAFT_3379 at 49.660 kb on - strand, within EX28DRAFT_3379 at 49.660 kb on - strand, within EX28DRAFT_3379 at 49.726 kb on + strand, within EX28DRAFT_3379 at 49.862 kb on + strand, within EX28DRAFT_3379 at 49.971 kb on - strand, within EX28DRAFT_3379 at 49.991 kb on + strand, within EX28DRAFT_3379 at 49.992 kb on - strand, within EX28DRAFT_3379 at 50.130 kb on - strand, within EX28DRAFT_3379 at 50.428 kb on + strand at 50.429 kb on - strand at 50.534 kb on - strand, within EX28DRAFT_3380 at 50.624 kb on + strand, within EX28DRAFT_3380 at 51.118 kb on + strand, within EX28DRAFT_3380 at 51.119 kb on - strand, within EX28DRAFT_3380 at 51.119 kb on - strand, within EX28DRAFT_3380 at 51.389 kb on - strand, within EX28DRAFT_3380 at 51.390 kb on + strand, within EX28DRAFT_3380 at 51.391 kb on - strand, within EX28DRAFT_3380 at 51.425 kb on - strand, within EX28DRAFT_3380 at 51.425 kb on - strand, within EX28DRAFT_3380 at 51.425 kb on - strand, within EX28DRAFT_3380 at 51.519 kb on + strand, within EX28DRAFT_3380 at 51.699 kb on + strand, within EX28DRAFT_3380 at 51.914 kb on - strand, within EX28DRAFT_3380 at 51.914 kb on - strand, within EX28DRAFT_3380 at 51.958 kb on + strand, within EX28DRAFT_3380 at 51.959 kb on - strand, within EX28DRAFT_3380 at 51.988 kb on + strand, within EX28DRAFT_3380 at 51.989 kb on - strand, within EX28DRAFT_3380 at 52.035 kb on + strand, within EX28DRAFT_3380 at 52.035 kb on + strand, within EX28DRAFT_3380 at 52.036 kb on - strand, within EX28DRAFT_3380 at 52.036 kb on - strand, within EX28DRAFT_3380 at 52.036 kb on - strand, within EX28DRAFT_3380 at 52.036 kb on - strand, within EX28DRAFT_3380 at 52.036 kb on - strand, within EX28DRAFT_3380 at 52.066 kb on + strand at 52.066 kb on + strand at 52.279 kb on - strand at 52.429 kb on + strand at 52.527 kb on + strand, within EX28DRAFT_3381 at 52.572 kb on - strand, within EX28DRAFT_3381 at 52.722 kb on + strand at 52.722 kb on + strand at 52.723 kb on - strand at 52.756 kb on + strand at 52.790 kb on - strand at 52.811 kb on - strand at 52.811 kb on - strand at 52.828 kb on + strand at 52.854 kb on - strand at 52.857 kb on + strand at 52.857 kb on + strand at 52.858 kb on - strand at 52.858 kb on - strand at 52.858 kb on - strand at 52.894 kb on + strand, within EX28DRAFT_3382 at 52.926 kb on - strand, within EX28DRAFT_3382 at 52.926 kb on - strand, within EX28DRAFT_3382 at 52.929 kb on - strand, within EX28DRAFT_3382 at 53.024 kb on - strand, within EX28DRAFT_3382 at 53.154 kb on + strand at 53.160 kb on + strand at 53.160 kb on + strand at 53.160 kb on + strand at 53.161 kb on - strand at 53.181 kb on + strand at 53.181 kb on + strand at 53.182 kb on - strand at 53.186 kb on + strand at 53.186 kb on + strand at 53.186 kb on + strand at 53.186 kb on + strand at 53.187 kb on - strand at 53.242 kb on - strand at 53.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 49,327 - EX28DRAFT_3379 0.38 -0.0 49,343 + EX28DRAFT_3379 0.39 -0.9 49,343 + EX28DRAFT_3379 0.39 +0.0 49,659 + EX28DRAFT_3379 0.59 +0.5 49,660 - EX28DRAFT_3379 0.59 +0.1 49,660 - EX28DRAFT_3379 0.59 +5.0 49,726 + EX28DRAFT_3379 0.63 -0.4 49,862 + EX28DRAFT_3379 0.71 +1.3 49,971 - EX28DRAFT_3379 0.78 +0.5 49,991 + EX28DRAFT_3379 0.79 -1.5 49,992 - EX28DRAFT_3379 0.79 +0.9 50,130 - EX28DRAFT_3379 0.88 -3.0 50,428 + -0.5 50,429 - -0.7 50,534 - EX28DRAFT_3380 0.11 +0.1 50,624 + EX28DRAFT_3380 0.16 -0.5 51,118 + EX28DRAFT_3380 0.41 -1.3 51,119 - EX28DRAFT_3380 0.41 +2.1 51,119 - EX28DRAFT_3380 0.41 -2.4 51,389 - EX28DRAFT_3380 0.55 +2.2 51,390 + EX28DRAFT_3380 0.55 +2.1 51,391 - EX28DRAFT_3380 0.55 +0.2 51,425 - EX28DRAFT_3380 0.57 +0.4 51,425 - EX28DRAFT_3380 0.57 -1.4 51,425 - EX28DRAFT_3380 0.57 +0.8 51,519 + EX28DRAFT_3380 0.62 +1.1 51,699 + EX28DRAFT_3380 0.71 +0.1 51,914 - EX28DRAFT_3380 0.82 -0.4 51,914 - EX28DRAFT_3380 0.82 +0.3 51,958 + EX28DRAFT_3380 0.85 +0.5 51,959 - EX28DRAFT_3380 0.85 +0.7 51,988 + EX28DRAFT_3380 0.86 +0.6 51,989 - EX28DRAFT_3380 0.86 -1.6 52,035 + EX28DRAFT_3380 0.89 +0.4 52,035 + EX28DRAFT_3380 0.89 -0.2 52,036 - EX28DRAFT_3380 0.89 +1.4 52,036 - EX28DRAFT_3380 0.89 -1.2 52,036 - EX28DRAFT_3380 0.89 -0.4 52,036 - EX28DRAFT_3380 0.89 +0.9 52,036 - EX28DRAFT_3380 0.89 +0.7 52,066 + +0.3 52,066 + +1.7 52,279 - -1.0 52,429 + -2.1 52,527 + EX28DRAFT_3381 0.36 +2.3 52,572 - EX28DRAFT_3381 0.52 -2.5 52,722 + +1.5 52,722 + +0.3 52,723 - -3.5 52,756 + -0.4 52,790 - +0.4 52,811 - +0.4 52,811 - +1.3 52,828 + +1.9 52,854 - +0.2 52,857 + -1.8 52,857 + +0.4 52,858 - +0.5 52,858 - -0.4 52,858 - +0.9 52,894 + EX28DRAFT_3382 0.14 +0.4 52,926 - EX28DRAFT_3382 0.24 -1.2 52,926 - EX28DRAFT_3382 0.24 +0.8 52,929 - EX28DRAFT_3382 0.25 +2.3 53,024 - EX28DRAFT_3382 0.56 -0.0 53,154 + -0.7 53,160 + -0.2 53,160 + -0.6 53,160 + -0.3 53,161 - -1.1 53,181 + +0.2 53,181 + -2.1 53,182 - +0.6 53,186 + +0.3 53,186 + -1.4 53,186 + +0.7 53,186 + -1.7 53,187 - -0.0 53,242 - -0.8 53,242 - -0.1
Or see this region's nucleotide sequence