Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3310 and EX28DRAFT_3311 are separated by 11 nucleotides EX28DRAFT_3311 and EX28DRAFT_3312 are separated by 125 nucleotides
EX28DRAFT_3310: EX28DRAFT_3310 - sodium/pantothenate symporter, at 609,806 to 611,257
_3310
EX28DRAFT_3311: EX28DRAFT_3311 - ribosomal protein L11 methyltransferase, at 611,269 to 612,150
_3311
EX28DRAFT_3312: EX28DRAFT_3312 - Carbonic anhydrase, at 612,276 to 613,019
_3312
Position (kb) 611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2 at 610.319 kb on + strand, within EX28DRAFT_3310 at 610.320 kb on - strand, within EX28DRAFT_3310 at 610.519 kb on + strand, within EX28DRAFT_3310 at 610.585 kb on + strand, within EX28DRAFT_3310 at 610.585 kb on + strand, within EX28DRAFT_3310 at 610.624 kb on + strand, within EX28DRAFT_3310 at 610.625 kb on - strand, within EX28DRAFT_3310 at 610.663 kb on + strand, within EX28DRAFT_3310 at 610.696 kb on + strand, within EX28DRAFT_3310 at 610.696 kb on + strand, within EX28DRAFT_3310 at 610.697 kb on - strand, within EX28DRAFT_3310 at 610.697 kb on - strand, within EX28DRAFT_3310 at 610.750 kb on - strand, within EX28DRAFT_3310 at 610.802 kb on - strand, within EX28DRAFT_3310 at 610.924 kb on + strand, within EX28DRAFT_3310 at 610.925 kb on - strand, within EX28DRAFT_3310 at 611.256 kb on - strand at 611.464 kb on - strand, within EX28DRAFT_3311 at 612.192 kb on + strand at 612.192 kb on + strand at 612.251 kb on + strand at 612.357 kb on + strand, within EX28DRAFT_3312 at 612.358 kb on - strand, within EX28DRAFT_3312 at 612.444 kb on - strand, within EX28DRAFT_3312 at 612.493 kb on - strand, within EX28DRAFT_3312 at 612.530 kb on + strand, within EX28DRAFT_3312 at 612.531 kb on - strand, within EX28DRAFT_3312 at 612.555 kb on - strand, within EX28DRAFT_3312 at 612.572 kb on + strand, within EX28DRAFT_3312 at 612.572 kb on + strand, within EX28DRAFT_3312 at 612.573 kb on - strand, within EX28DRAFT_3312 at 612.582 kb on - strand, within EX28DRAFT_3312 at 612.598 kb on + strand, within EX28DRAFT_3312 at 612.598 kb on + strand, within EX28DRAFT_3312 at 612.599 kb on - strand, within EX28DRAFT_3312 at 612.638 kb on - strand, within EX28DRAFT_3312 at 612.678 kb on - strand, within EX28DRAFT_3312 at 612.745 kb on + strand, within EX28DRAFT_3312 at 612.837 kb on - strand, within EX28DRAFT_3312 at 612.844 kb on - strand, within EX28DRAFT_3312 at 612.904 kb on + strand, within EX28DRAFT_3312 at 612.905 kb on - strand, within EX28DRAFT_3312 at 612.905 kb on - strand, within EX28DRAFT_3312 at 612.908 kb on + strand, within EX28DRAFT_3312 at 612.908 kb on + strand, within EX28DRAFT_3312 at 612.908 kb on + strand, within EX28DRAFT_3312 at 612.971 kb on + strand at 612.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 610,319 + EX28DRAFT_3310 0.35 -0.5 610,320 - EX28DRAFT_3310 0.35 +0.0 610,519 + EX28DRAFT_3310 0.49 +0.8 610,585 + EX28DRAFT_3310 0.54 -1.0 610,585 + EX28DRAFT_3310 0.54 -0.2 610,624 + EX28DRAFT_3310 0.56 -0.7 610,625 - EX28DRAFT_3310 0.56 -1.3 610,663 + EX28DRAFT_3310 0.59 -1.6 610,696 + EX28DRAFT_3310 0.61 -1.0 610,696 + EX28DRAFT_3310 0.61 -0.3 610,697 - EX28DRAFT_3310 0.61 +1.8 610,697 - EX28DRAFT_3310 0.61 -0.1 610,750 - EX28DRAFT_3310 0.65 -2.5 610,802 - EX28DRAFT_3310 0.69 +0.2 610,924 + EX28DRAFT_3310 0.77 +0.3 610,925 - EX28DRAFT_3310 0.77 -1.6 611,256 - +1.0 611,464 - EX28DRAFT_3311 0.22 -2.2 612,192 + -0.0 612,192 + +1.2 612,251 + +0.3 612,357 + EX28DRAFT_3312 0.11 -0.5 612,358 - EX28DRAFT_3312 0.11 +1.8 612,444 - EX28DRAFT_3312 0.23 -0.2 612,493 - EX28DRAFT_3312 0.29 -1.5 612,530 + EX28DRAFT_3312 0.34 -0.1 612,531 - EX28DRAFT_3312 0.34 -1.1 612,555 - EX28DRAFT_3312 0.38 +1.5 612,572 + EX28DRAFT_3312 0.40 +0.1 612,572 + EX28DRAFT_3312 0.40 -0.3 612,573 - EX28DRAFT_3312 0.40 +1.1 612,582 - EX28DRAFT_3312 0.41 -1.4 612,598 + EX28DRAFT_3312 0.43 -0.7 612,598 + EX28DRAFT_3312 0.43 +0.3 612,599 - EX28DRAFT_3312 0.43 +0.0 612,638 - EX28DRAFT_3312 0.49 -1.2 612,678 - EX28DRAFT_3312 0.54 +0.7 612,745 + EX28DRAFT_3312 0.63 +0.3 612,837 - EX28DRAFT_3312 0.75 -0.3 612,844 - EX28DRAFT_3312 0.76 +2.1 612,904 + EX28DRAFT_3312 0.84 -0.5 612,905 - EX28DRAFT_3312 0.85 +1.3 612,905 - EX28DRAFT_3312 0.85 +0.7 612,908 + EX28DRAFT_3312 0.85 +0.6 612,908 + EX28DRAFT_3312 0.85 +0.2 612,908 + EX28DRAFT_3312 0.85 +0.2 612,971 + +1.7 612,972 - -0.5
Or see this region's nucleotide sequence