Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3296 and EX28DRAFT_3297 are separated by 42 nucleotides EX28DRAFT_3297 and EX28DRAFT_3298 overlap by 11 nucleotides EX28DRAFT_3298 and EX28DRAFT_3299 are separated by 9 nucleotides
EX28DRAFT_3296: EX28DRAFT_3296 - TIGR02099 family protein, at 593,358 to 597,161
_3296
EX28DRAFT_3297: EX28DRAFT_3297 - ribonuclease, Rne/Rng family, at 597,204 to 598,673
_3297
EX28DRAFT_3298: EX28DRAFT_3298 - MAF protein, at 598,663 to 599,256
_3298
EX28DRAFT_3299: EX28DRAFT_3299 - rod shape-determining protein MreD, at 599,266 to 599,754
_3299
Position (kb) 597
598
599 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 596.373 kb on - strand, within EX28DRAFT_3296 at 596.373 kb on - strand, within EX28DRAFT_3296 at 596.636 kb on + strand, within EX28DRAFT_3296 at 596.696 kb on + strand, within EX28DRAFT_3296 at 596.696 kb on + strand, within EX28DRAFT_3296 at 596.697 kb on - strand, within EX28DRAFT_3296 at 596.829 kb on - strand at 596.984 kb on + strand at 596.990 kb on + strand at 597.001 kb on - strand at 597.001 kb on - strand at 597.075 kb on + strand at 597.076 kb on - strand at 597.076 kb on - strand at 597.076 kb on - strand at 597.132 kb on - strand at 597.138 kb on + strand at 597.139 kb on - strand at 597.196 kb on - strand at 597.205 kb on + strand at 597.206 kb on - strand at 597.206 kb on - strand at 597.206 kb on - strand at 597.236 kb on + strand at 597.238 kb on + strand at 597.346 kb on + strand at 597.346 kb on + strand at 597.347 kb on - strand at 597.371 kb on - strand, within EX28DRAFT_3297 at 597.401 kb on + strand, within EX28DRAFT_3297 at 597.474 kb on + strand, within EX28DRAFT_3297 at 597.503 kb on + strand, within EX28DRAFT_3297 at 597.624 kb on - strand, within EX28DRAFT_3297 at 597.896 kb on - strand, within EX28DRAFT_3297 at 597.928 kb on + strand, within EX28DRAFT_3297 at 598.300 kb on - strand, within EX28DRAFT_3297 at 598.305 kb on - strand, within EX28DRAFT_3297 at 598.305 kb on - strand, within EX28DRAFT_3297 at 598.457 kb on + strand, within EX28DRAFT_3297 at 598.470 kb on + strand, within EX28DRAFT_3297 at 598.501 kb on - strand, within EX28DRAFT_3297 at 598.525 kb on - strand, within EX28DRAFT_3297 at 598.554 kb on - strand at 598.563 kb on + strand at 598.622 kb on - strand at 598.647 kb on + strand at 598.673 kb on + strand at 598.674 kb on - strand at 598.722 kb on - strand at 598.846 kb on - strand, within EX28DRAFT_3298 at 598.847 kb on + strand, within EX28DRAFT_3298 at 598.848 kb on - strand, within EX28DRAFT_3298 at 598.874 kb on - strand, within EX28DRAFT_3298 at 599.046 kb on + strand, within EX28DRAFT_3298 at 599.047 kb on - strand, within EX28DRAFT_3298 at 599.127 kb on - strand, within EX28DRAFT_3298 at 599.244 kb on - strand at 599.256 kb on + strand at 599.268 kb on - strand at 599.268 kb on - strand at 599.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 596,373 - EX28DRAFT_3296 0.79 +0.2 596,373 - EX28DRAFT_3296 0.79 -2.2 596,636 + EX28DRAFT_3296 0.86 -1.1 596,696 + EX28DRAFT_3296 0.88 -2.1 596,696 + EX28DRAFT_3296 0.88 +0.2 596,697 - EX28DRAFT_3296 0.88 +0.1 596,829 - -1.5 596,984 + +0.6 596,990 + -0.4 597,001 - -1.9 597,001 - -2.5 597,075 + +1.7 597,076 - -1.7 597,076 - -0.5 597,076 - +0.6 597,132 - -0.1 597,138 + -0.7 597,139 - +0.0 597,196 - -0.5 597,205 + +0.3 597,206 - -0.2 597,206 - -1.0 597,206 - +0.5 597,236 + -0.3 597,238 + -0.5 597,346 + -1.9 597,346 + +0.8 597,347 - -0.6 597,371 - EX28DRAFT_3297 0.11 -0.8 597,401 + EX28DRAFT_3297 0.13 -2.0 597,474 + EX28DRAFT_3297 0.18 -1.3 597,503 + EX28DRAFT_3297 0.20 +0.6 597,624 - EX28DRAFT_3297 0.29 -3.0 597,896 - EX28DRAFT_3297 0.47 -2.5 597,928 + EX28DRAFT_3297 0.49 -1.2 598,300 - EX28DRAFT_3297 0.75 -2.0 598,305 - EX28DRAFT_3297 0.75 -2.5 598,305 - EX28DRAFT_3297 0.75 -1.4 598,457 + EX28DRAFT_3297 0.85 -1.8 598,470 + EX28DRAFT_3297 0.86 -2.2 598,501 - EX28DRAFT_3297 0.88 -0.4 598,525 - EX28DRAFT_3297 0.90 -1.5 598,554 - -3.4 598,563 + -1.0 598,622 - -3.1 598,647 + -0.6 598,673 + +0.6 598,674 - -2.2 598,722 - -1.5 598,846 - EX28DRAFT_3298 0.31 -0.1 598,847 + EX28DRAFT_3298 0.31 -0.1 598,848 - EX28DRAFT_3298 0.31 +0.3 598,874 - EX28DRAFT_3298 0.36 -0.0 599,046 + EX28DRAFT_3298 0.64 -0.6 599,047 - EX28DRAFT_3298 0.65 +0.7 599,127 - EX28DRAFT_3298 0.78 -0.6 599,244 - -0.1 599,256 + -0.2 599,268 - -3.6 599,268 - +0.6 599,296 - -0.2
Or see this region's nucleotide sequence