Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3295

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3294 and EX28DRAFT_3295 are separated by 77 nucleotidesEX28DRAFT_3295 and EX28DRAFT_3296 are separated by 84 nucleotides EX28DRAFT_3294: EX28DRAFT_3294 - Transcriptional regulator, at 590,824 to 591,750 _3294 EX28DRAFT_3295: EX28DRAFT_3295 - Predicted Zn-dependent proteases and their inactivated homologs, at 591,828 to 593,273 _3295 EX28DRAFT_3296: EX28DRAFT_3296 - TIGR02099 family protein, at 593,358 to 597,161 _3296 Position (kb) 591 592 593 594Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 591.036 kb on + strand, within EX28DRAFT_3294at 591.037 kb on - strand, within EX28DRAFT_3294at 591.073 kb on + strand, within EX28DRAFT_3294at 591.073 kb on + strand, within EX28DRAFT_3294at 591.126 kb on + strand, within EX28DRAFT_3294at 591.126 kb on + strand, within EX28DRAFT_3294at 591.535 kb on + strand, within EX28DRAFT_3294at 591.536 kb on - strand, within EX28DRAFT_3294at 591.634 kb on + strand, within EX28DRAFT_3294at 591.635 kb on - strand, within EX28DRAFT_3294at 591.666 kb on - strandat 591.675 kb on + strandat 591.675 kb on + strandat 591.675 kb on + strandat 591.676 kb on - strandat 591.678 kb on + strandat 591.678 kb on + strandat 591.678 kb on + strandat 591.678 kb on + strandat 591.678 kb on + strandat 591.679 kb on - strandat 591.679 kb on - strandat 591.679 kb on - strandat 591.679 kb on - strandat 591.679 kb on - strandat 591.682 kb on + strandat 591.682 kb on + strandat 591.683 kb on - strandat 591.694 kb on + strandat 591.695 kb on - strandat 591.748 kb on + strandat 591.829 kb on + strandat 592.042 kb on + strand, within EX28DRAFT_3295at 592.043 kb on - strand, within EX28DRAFT_3295at 592.174 kb on + strand, within EX28DRAFT_3295at 592.174 kb on + strand, within EX28DRAFT_3295at 592.175 kb on - strand, within EX28DRAFT_3295at 592.182 kb on - strand, within EX28DRAFT_3295at 592.210 kb on + strand, within EX28DRAFT_3295at 592.279 kb on + strand, within EX28DRAFT_3295at 592.280 kb on - strand, within EX28DRAFT_3295at 592.786 kb on + strand, within EX28DRAFT_3295at 592.915 kb on + strand, within EX28DRAFT_3295at 592.915 kb on + strand, within EX28DRAFT_3295at 593.035 kb on + strand, within EX28DRAFT_3295at 593.096 kb on - strand, within EX28DRAFT_3295at 593.124 kb on + strand, within EX28DRAFT_3295at 593.125 kb on - strand, within EX28DRAFT_3295at 593.158 kb on + strandat 593.158 kb on + strandat 593.256 kb on + strandat 593.276 kb on + strandat 593.276 kb on + strandat 593.276 kb on + strandat 593.277 kb on - strandat 593.282 kb on + strandat 593.308 kb on + strandat 593.308 kb on + strandat 593.310 kb on + strandat 593.310 kb on + strandat 593.310 kb on + strandat 593.311 kb on - strandat 593.319 kb on + strandat 593.319 kb on + strandat 593.320 kb on - strandat 593.412 kb on - strandat 593.707 kb on + strandat 593.727 kb on - strandat 593.945 kb on + strand, within EX28DRAFT_3296at 593.985 kb on - strand, within EX28DRAFT_3296at 594.239 kb on + strand, within EX28DRAFT_3296at 594.240 kb on - strand, within EX28DRAFT_3296at 594.272 kb on - strand, within EX28DRAFT_3296

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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591,036 + EX28DRAFT_3294 0.23 -2.1
591,037 - EX28DRAFT_3294 0.23 +0.8
591,073 + EX28DRAFT_3294 0.27 +0.1
591,073 + EX28DRAFT_3294 0.27 +1.6
591,126 + EX28DRAFT_3294 0.33 -3.1
591,126 + EX28DRAFT_3294 0.33 +0.0
591,535 + EX28DRAFT_3294 0.77 -2.8
591,536 - EX28DRAFT_3294 0.77 +1.6
591,634 + EX28DRAFT_3294 0.87 -0.1
591,635 - EX28DRAFT_3294 0.87 +3.3
591,666 - +0.7
591,675 + +0.2
591,675 + -0.9
591,675 + +0.1
591,676 - -0.7
591,678 + +1.0
591,678 + -1.3
591,678 + +1.6
591,678 + +0.0
591,678 + +0.6
591,679 - -0.9
591,679 - +0.1
591,679 - +0.4
591,679 - -2.4
591,679 - -0.2
591,682 + -1.5
591,682 + +0.4
591,683 - +0.4
591,694 + +1.1
591,695 - +0.6
591,748 + -0.4
591,829 + +0.3
592,042 + EX28DRAFT_3295 0.15 -1.2
592,043 - EX28DRAFT_3295 0.15 -1.0
592,174 + EX28DRAFT_3295 0.24 -0.4
592,174 + EX28DRAFT_3295 0.24 +0.5
592,175 - EX28DRAFT_3295 0.24 -1.4
592,182 - EX28DRAFT_3295 0.24 -0.5
592,210 + EX28DRAFT_3295 0.26 -0.3
592,279 + EX28DRAFT_3295 0.31 +0.4
592,280 - EX28DRAFT_3295 0.31 -1.5
592,786 + EX28DRAFT_3295 0.66 -1.5
592,915 + EX28DRAFT_3295 0.75 +0.4
592,915 + EX28DRAFT_3295 0.75 -1.1
593,035 + EX28DRAFT_3295 0.83 -0.2
593,096 - EX28DRAFT_3295 0.88 -1.8
593,124 + EX28DRAFT_3295 0.90 -0.9
593,125 - EX28DRAFT_3295 0.90 +0.4
593,158 + +1.5
593,158 + -0.7
593,256 + +0.7
593,276 + -0.3
593,276 + -2.7
593,276 + -0.5
593,277 - -0.9
593,282 + -1.8
593,308 + -0.1
593,308 + -2.3
593,310 + -0.8
593,310 + -0.2
593,310 + -1.0
593,311 - +0.1
593,319 + -2.5
593,319 + -1.4
593,320 - -0.6
593,412 - -1.1
593,707 + -2.2
593,727 - +0.1
593,945 + EX28DRAFT_3296 0.15 -1.0
593,985 - EX28DRAFT_3296 0.16 +0.4
594,239 + EX28DRAFT_3296 0.23 -0.9
594,240 - EX28DRAFT_3296 0.23 +1.6
594,272 - EX28DRAFT_3296 0.24 -0.8

Or see this region's nucleotide sequence