Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3276 and EX28DRAFT_3277 are separated by 29 nucleotides EX28DRAFT_3277 and EX28DRAFT_3278 overlap by 1 nucleotides EX28DRAFT_3278 and EX28DRAFT_3279 are separated by 308 nucleotides EX28DRAFT_3279 and EX28DRAFT_3280 are separated by 15 nucleotides
EX28DRAFT_3276: EX28DRAFT_3276 - glutamate synthase small subunit family protein, proteobacterial, at 574,277 to 575,695
_3276
EX28DRAFT_3277: EX28DRAFT_3277 - Stringent starvation protein B, at 575,725 to 576,228
_3277
EX28DRAFT_3278: EX28DRAFT_3278 - Glutathione S-transferase, at 576,228 to 576,866
_3278
EX28DRAFT_3279: EX28DRAFT_3279 - Ribosomal protein S9, at 577,175 to 577,567
_3279
EX28DRAFT_3280: EX28DRAFT_3280 - LSU ribosomal protein L13P, at 577,583 to 578,011
_3280
Position (kb) 576
577 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 575.229 kb on - strand, within EX28DRAFT_3276 at 575.347 kb on + strand, within EX28DRAFT_3276 at 575.681 kb on + strand at 575.820 kb on + strand, within EX28DRAFT_3277 at 575.820 kb on + strand, within EX28DRAFT_3277 at 575.821 kb on - strand, within EX28DRAFT_3277 at 575.894 kb on + strand, within EX28DRAFT_3277 at 575.942 kb on + strand, within EX28DRAFT_3277 at 575.943 kb on - strand, within EX28DRAFT_3277 at 575.943 kb on - strand, within EX28DRAFT_3277 at 575.946 kb on + strand, within EX28DRAFT_3277 at 575.946 kb on + strand, within EX28DRAFT_3277 at 576.170 kb on + strand, within EX28DRAFT_3277 at 576.170 kb on + strand, within EX28DRAFT_3277 at 576.308 kb on + strand, within EX28DRAFT_3278 at 576.309 kb on - strand, within EX28DRAFT_3278 at 576.311 kb on - strand, within EX28DRAFT_3278 at 576.349 kb on - strand, within EX28DRAFT_3278 at 576.804 kb on - strand at 576.805 kb on + strand at 576.805 kb on + strand at 576.806 kb on - strand at 576.806 kb on - strand at 576.806 kb on - strand at 576.806 kb on - strand at 576.816 kb on - strand at 576.880 kb on + strand at 576.880 kb on + strand at 576.880 kb on + strand at 576.880 kb on + strand at 576.880 kb on + strand at 576.881 kb on - strand at 576.881 kb on - strand at 576.883 kb on - strand at 576.995 kb on - strand at 577.080 kb on + strand at 577.080 kb on + strand at 577.080 kb on + strand at 577.081 kb on - strand at 577.081 kb on - strand at 577.082 kb on + strand at 577.082 kb on + strand at 577.083 kb on - strand at 577.083 kb on - strand at 577.092 kb on + strand at 577.093 kb on - strand at 577.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 575,229 - EX28DRAFT_3276 0.67 -1.8 575,347 + EX28DRAFT_3276 0.75 +0.2 575,681 + -0.7 575,820 + EX28DRAFT_3277 0.19 -0.3 575,820 + EX28DRAFT_3277 0.19 +0.2 575,821 - EX28DRAFT_3277 0.19 -0.7 575,894 + EX28DRAFT_3277 0.34 -0.6 575,942 + EX28DRAFT_3277 0.43 -2.0 575,943 - EX28DRAFT_3277 0.43 -0.2 575,943 - EX28DRAFT_3277 0.43 -3.3 575,946 + EX28DRAFT_3277 0.44 -0.8 575,946 + EX28DRAFT_3277 0.44 +0.0 576,170 + EX28DRAFT_3277 0.88 -2.3 576,170 + EX28DRAFT_3277 0.88 -0.9 576,308 + EX28DRAFT_3278 0.13 -2.5 576,309 - EX28DRAFT_3278 0.13 -2.8 576,311 - EX28DRAFT_3278 0.13 -2.4 576,349 - EX28DRAFT_3278 0.19 -2.6 576,804 - -3.5 576,805 + -1.9 576,805 + +0.8 576,806 - +0.4 576,806 - -0.9 576,806 - -0.7 576,806 - +0.8 576,816 - -1.3 576,880 + +1.3 576,880 + -1.7 576,880 + -1.3 576,880 + -3.2 576,880 + -2.4 576,881 - -1.0 576,881 - -1.0 576,883 - -4.3 576,995 - -1.6 577,080 + -1.2 577,080 + -2.5 577,080 + +1.4 577,081 - -1.2 577,081 - +0.1 577,082 + +0.2 577,082 + +0.2 577,083 - +1.1 577,083 - +1.5 577,092 + +1.5 577,093 - -2.7 577,113 + -0.0
Or see this region's nucleotide sequence