Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3266 and EX28DRAFT_3267 are separated by 266 nucleotides EX28DRAFT_3267 and EX28DRAFT_3268 are separated by 86 nucleotides EX28DRAFT_3268 and EX28DRAFT_3269 overlap by 1 nucleotides
EX28DRAFT_3266: EX28DRAFT_3266 - Predicted permeases, at 556,824 to 557,924
_3266
EX28DRAFT_3267: EX28DRAFT_3267 - Leucyl aminopeptidase, at 558,191 to 559,702
_3267
EX28DRAFT_3268: EX28DRAFT_3268 - DNA polymerase III, chi subunit (EC 2.7.7.7), at 559,789 to 560,232
_3268
EX28DRAFT_3269: EX28DRAFT_3269 - valyl-tRNA synthetase (EC 6.1.1.9), at 560,232 to 563,087
_3269
Position (kb) 558
559
560 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 557.994 kb on - strand at 558.028 kb on - strand at 558.084 kb on - strand at 558.089 kb on - strand at 558.185 kb on + strand at 558.185 kb on + strand at 558.185 kb on + strand at 558.204 kb on + strand at 558.319 kb on + strand at 558.794 kb on + strand, within EX28DRAFT_3267 at 558.896 kb on + strand, within EX28DRAFT_3267 at 558.950 kb on + strand, within EX28DRAFT_3267 at 559.024 kb on + strand, within EX28DRAFT_3267 at 559.064 kb on + strand, within EX28DRAFT_3267 at 559.064 kb on + strand, within EX28DRAFT_3267 at 559.064 kb on + strand, within EX28DRAFT_3267 at 559.064 kb on + strand, within EX28DRAFT_3267 at 559.119 kb on + strand, within EX28DRAFT_3267 at 559.120 kb on - strand, within EX28DRAFT_3267 at 559.184 kb on + strand, within EX28DRAFT_3267 at 559.264 kb on - strand, within EX28DRAFT_3267 at 559.466 kb on + strand, within EX28DRAFT_3267 at 559.466 kb on + strand, within EX28DRAFT_3267 at 559.467 kb on - strand, within EX28DRAFT_3267 at 559.572 kb on - strand at 559.701 kb on - strand at 559.755 kb on + strand at 559.760 kb on - strand at 559.763 kb on + strand at 559.764 kb on - strand at 559.764 kb on - strand at 559.786 kb on + strand at 559.787 kb on - strand at 559.787 kb on - strand at 559.788 kb on + strand at 559.788 kb on + strand at 559.788 kb on + strand at 559.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 557,994 - -2.8 558,028 - -0.6 558,084 - -1.8 558,089 - -2.1 558,185 + +0.1 558,185 + -1.5 558,185 + -0.0 558,204 + -1.2 558,319 + -2.3 558,794 + EX28DRAFT_3267 0.40 -2.1 558,896 + EX28DRAFT_3267 0.47 -1.2 558,950 + EX28DRAFT_3267 0.50 +0.6 559,024 + EX28DRAFT_3267 0.55 +1.7 559,064 + EX28DRAFT_3267 0.58 -2.0 559,064 + EX28DRAFT_3267 0.58 +0.0 559,064 + EX28DRAFT_3267 0.58 +0.2 559,064 + EX28DRAFT_3267 0.58 +1.6 559,119 + EX28DRAFT_3267 0.61 -0.4 559,120 - EX28DRAFT_3267 0.61 -2.7 559,184 + EX28DRAFT_3267 0.66 -0.9 559,264 - EX28DRAFT_3267 0.71 -0.3 559,466 + EX28DRAFT_3267 0.84 +0.5 559,466 + EX28DRAFT_3267 0.84 -0.0 559,467 - EX28DRAFT_3267 0.84 -1.5 559,572 - -0.7 559,701 - -0.5 559,755 + +0.6 559,760 - -0.8 559,763 + -0.9 559,764 - +1.2 559,764 - +0.2 559,786 + +1.5 559,787 - -1.1 559,787 - +0.4 559,788 + -0.3 559,788 + -1.7 559,788 + -0.6 559,789 - +0.6
Or see this region's nucleotide sequence