Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3251 and EX28DRAFT_3252 are separated by 14 nucleotides EX28DRAFT_3252 and EX28DRAFT_3253 overlap by 4 nucleotides EX28DRAFT_3253 and EX28DRAFT_3254 overlap by 32 nucleotides
EX28DRAFT_3251: EX28DRAFT_3251 - KpsF/GutQ family protein, at 544,697 to 545,683
_3251
EX28DRAFT_3252: EX28DRAFT_3252 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family, at 545,698 to 546,264
_3252
EX28DRAFT_3253: EX28DRAFT_3253 - Uncharacterized protein conserved in bacteria, at 546,261 to 546,836
_3253
EX28DRAFT_3254: EX28DRAFT_3254 - lipopolysaccharide transport periplasmic protein LptA, at 546,805 to 547,359
_3254
Position (kb) 545
546
547 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 544.708 kb on - strand at 544.785 kb on + strand at 544.785 kb on + strand at 544.830 kb on + strand, within EX28DRAFT_3251 at 544.831 kb on - strand, within EX28DRAFT_3251 at 544.939 kb on - strand, within EX28DRAFT_3251 at 545.320 kb on + strand, within EX28DRAFT_3251 at 545.323 kb on + strand, within EX28DRAFT_3251 at 545.323 kb on + strand, within EX28DRAFT_3251 at 545.410 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.602 kb on + strand at 545.602 kb on + strand at 545.646 kb on + strand at 545.646 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.676 kb on + strand at 545.681 kb on + strand at 545.681 kb on + strand at 545.824 kb on + strand, within EX28DRAFT_3252 at 545.937 kb on + strand, within EX28DRAFT_3252 at 545.937 kb on + strand, within EX28DRAFT_3252 at 546.061 kb on + strand, within EX28DRAFT_3252 at 546.714 kb on + strand, within EX28DRAFT_3253 at 546.728 kb on + strand, within EX28DRAFT_3253
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 544,708 - -0.9 544,785 + +0.8 544,785 + -0.8 544,830 + EX28DRAFT_3251 0.13 +0.5 544,831 - EX28DRAFT_3251 0.14 -1.1 544,939 - EX28DRAFT_3251 0.25 -2.1 545,320 + EX28DRAFT_3251 0.63 +0.1 545,323 + EX28DRAFT_3251 0.63 +2.4 545,323 + EX28DRAFT_3251 0.63 -1.1 545,410 + EX28DRAFT_3251 0.72 -1.6 545,493 + EX28DRAFT_3251 0.81 +0.0 545,493 + EX28DRAFT_3251 0.81 +0.4 545,493 + EX28DRAFT_3251 0.81 +1.4 545,493 + EX28DRAFT_3251 0.81 -1.6 545,493 + EX28DRAFT_3251 0.81 -0.6 545,493 + EX28DRAFT_3251 0.81 +1.6 545,493 + EX28DRAFT_3251 0.81 +0.8 545,493 + EX28DRAFT_3251 0.81 -0.3 545,602 + -1.3 545,602 + -2.6 545,646 + -0.3 545,646 + -0.2 545,650 + -0.1 545,650 + +0.4 545,650 + +2.3 545,650 + +0.1 545,650 + +0.7 545,650 + -2.0 545,650 + -1.2 545,650 + -0.3 545,650 + +0.3 545,650 + -2.8 545,650 + -1.4 545,650 + -0.2 545,650 + +1.4 545,676 + -1.4 545,681 + +0.4 545,681 + +0.9 545,824 + EX28DRAFT_3252 0.22 -1.1 545,937 + EX28DRAFT_3252 0.42 -3.7 545,937 + EX28DRAFT_3252 0.42 -1.0 546,061 + EX28DRAFT_3252 0.64 -1.1 546,714 + EX28DRAFT_3253 0.79 -1.0 546,728 + EX28DRAFT_3253 0.81 -1.7
Or see this region's nucleotide sequence