Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3184 and EX28DRAFT_3185 are separated by 72 nucleotides EX28DRAFT_3185 and EX28DRAFT_3186 are separated by 251 nucleotides
EX28DRAFT_3184: EX28DRAFT_3184 - galactarate dehydratase, at 484,415 to 485,986
_3184
EX28DRAFT_3185: EX28DRAFT_3185 - transcriptional regulator, DeoR family, at 486,059 to 486,862
_3185
EX28DRAFT_3186: EX28DRAFT_3186 - D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit, at 487,114 to 488,409
_3186
Position (kb) 486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 485.473 kb on + strand, within EX28DRAFT_3184 at 485.478 kb on - strand, within EX28DRAFT_3184 at 485.478 kb on - strand, within EX28DRAFT_3184 at 485.478 kb on - strand, within EX28DRAFT_3184 at 485.707 kb on + strand, within EX28DRAFT_3184 at 485.808 kb on - strand, within EX28DRAFT_3184 at 485.814 kb on + strand, within EX28DRAFT_3184 at 485.943 kb on + strand at 485.943 kb on + strand at 485.944 kb on - strand at 485.944 kb on - strand at 485.947 kb on + strand at 485.947 kb on + strand at 485.948 kb on - strand at 486.134 kb on - strand at 486.215 kb on - strand, within EX28DRAFT_3185 at 486.508 kb on - strand, within EX28DRAFT_3185 at 486.596 kb on - strand, within EX28DRAFT_3185 at 486.947 kb on - strand at 486.947 kb on - strand at 486.951 kb on - strand at 487.040 kb on - strand at 487.092 kb on - strand at 487.147 kb on - strand at 487.171 kb on + strand at 487.171 kb on + strand at 487.171 kb on + strand at 487.621 kb on + strand, within EX28DRAFT_3186 at 487.773 kb on + strand, within EX28DRAFT_3186
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 485,473 + EX28DRAFT_3184 0.67 -1.5 485,478 - EX28DRAFT_3184 0.68 +0.3 485,478 - EX28DRAFT_3184 0.68 +0.2 485,478 - EX28DRAFT_3184 0.68 -1.1 485,707 + EX28DRAFT_3184 0.82 -0.4 485,808 - EX28DRAFT_3184 0.89 -3.1 485,814 + EX28DRAFT_3184 0.89 +1.4 485,943 + +1.5 485,943 + +0.4 485,944 - -0.0 485,944 - -1.6 485,947 + -1.6 485,947 + -1.0 485,948 - +0.2 486,134 - +1.9 486,215 - EX28DRAFT_3185 0.19 -0.8 486,508 - EX28DRAFT_3185 0.56 -1.2 486,596 - EX28DRAFT_3185 0.67 -3.4 486,947 - +0.5 486,947 - +0.4 486,951 - -3.5 487,040 - +0.3 487,092 - +0.7 487,147 - +0.5 487,171 + +0.4 487,171 + -0.0 487,171 + -1.3 487,621 + EX28DRAFT_3186 0.39 -0.1 487,773 + EX28DRAFT_3186 0.51 +0.6
Or see this region's nucleotide sequence