Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3175

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3173 and EX28DRAFT_3174 are separated by 90 nucleotidesEX28DRAFT_3174 and EX28DRAFT_3175 are separated by 153 nucleotidesEX28DRAFT_3175 and EX28DRAFT_3176 are separated by 15 nucleotides EX28DRAFT_3173: EX28DRAFT_3173 - Pirin-related protein, at 472,989 to 473,690 _3173 EX28DRAFT_3174: EX28DRAFT_3174 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 473,781 to 474,191 _3174 EX28DRAFT_3175: EX28DRAFT_3175 - formate acetyltransferase 1, at 474,345 to 476,639 _3175 EX28DRAFT_3176: EX28DRAFT_3176 - acetate kinase, at 476,655 to 477,863 _3176 Position (kb) 474 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 473.402 kb on + strand, within EX28DRAFT_3173at 473.436 kb on - strand, within EX28DRAFT_3173at 473.441 kb on + strand, within EX28DRAFT_3173at 473.533 kb on - strand, within EX28DRAFT_3173at 473.536 kb on + strand, within EX28DRAFT_3173at 473.537 kb on - strand, within EX28DRAFT_3173at 473.537 kb on - strand, within EX28DRAFT_3173at 473.543 kb on + strand, within EX28DRAFT_3173at 473.558 kb on - strand, within EX28DRAFT_3173at 473.695 kb on + strandat 473.696 kb on - strandat 473.813 kb on + strandat 473.823 kb on - strand, within EX28DRAFT_3174at 473.861 kb on - strand, within EX28DRAFT_3174at 473.861 kb on - strand, within EX28DRAFT_3174at 473.863 kb on + strand, within EX28DRAFT_3174at 474.002 kb on + strand, within EX28DRAFT_3174at 474.003 kb on - strand, within EX28DRAFT_3174at 474.003 kb on - strand, within EX28DRAFT_3174at 474.003 kb on - strand, within EX28DRAFT_3174at 474.048 kb on - strand, within EX28DRAFT_3174at 474.194 kb on + strandat 474.195 kb on - strandat 474.195 kb on - strandat 474.195 kb on - strandat 474.203 kb on + strandat 474.203 kb on + strandat 474.203 kb on + strandat 474.203 kb on + strandat 474.204 kb on - strandat 474.204 kb on - strandat 474.204 kb on - strandat 474.204 kb on - strandat 474.204 kb on - strandat 474.204 kb on - strandat 474.231 kb on + strandat 474.255 kb on + strandat 474.256 kb on - strandat 474.256 kb on - strandat 474.256 kb on - strandat 474.256 kb on - strandat 474.256 kb on - strandat 474.256 kb on - strandat 474.256 kb on - strandat 474.266 kb on - strandat 474.266 kb on - strandat 474.269 kb on + strandat 474.270 kb on - strandat 474.270 kb on - strandat 474.270 kb on - strandat 474.270 kb on - strandat 474.270 kb on - strandat 474.271 kb on + strandat 474.273 kb on + strandat 474.351 kb on - strandat 474.632 kb on - strand, within EX28DRAFT_3175at 474.632 kb on - strand, within EX28DRAFT_3175at 474.652 kb on + strand, within EX28DRAFT_3175at 474.653 kb on - strand, within EX28DRAFT_3175at 474.872 kb on + strand, within EX28DRAFT_3175at 474.929 kb on - strand, within EX28DRAFT_3175at 475.004 kb on - strand, within EX28DRAFT_3175at 475.004 kb on - strand, within EX28DRAFT_3175at 475.108 kb on + strand, within EX28DRAFT_3175at 475.108 kb on + strand, within EX28DRAFT_3175at 475.114 kb on + strand, within EX28DRAFT_3175at 475.115 kb on - strand, within EX28DRAFT_3175at 475.115 kb on - strand, within EX28DRAFT_3175at 475.118 kb on + strand, within EX28DRAFT_3175at 475.119 kb on - strand, within EX28DRAFT_3175at 475.119 kb on - strand, within EX28DRAFT_3175at 475.129 kb on + strand, within EX28DRAFT_3175at 475.156 kb on + strand, within EX28DRAFT_3175at 475.157 kb on - strand, within EX28DRAFT_3175at 475.179 kb on - strand, within EX28DRAFT_3175at 475.211 kb on - strand, within EX28DRAFT_3175at 475.211 kb on - strand, within EX28DRAFT_3175at 475.385 kb on - strand, within EX28DRAFT_3175at 475.569 kb on - strand, within EX28DRAFT_3175at 475.768 kb on + strand, within EX28DRAFT_3175at 475.768 kb on + strand, within EX28DRAFT_3175at 475.768 kb on + strand, within EX28DRAFT_3175at 475.769 kb on - strand, within EX28DRAFT_3175at 475.769 kb on - strand, within EX28DRAFT_3175at 475.769 kb on - strand, within EX28DRAFT_3175at 475.849 kb on + strand, within EX28DRAFT_3175at 475.906 kb on + strand, within EX28DRAFT_3175at 475.906 kb on + strand, within EX28DRAFT_3175at 476.024 kb on + strand, within EX28DRAFT_3175at 476.066 kb on - strand, within EX28DRAFT_3175at 476.221 kb on + strand, within EX28DRAFT_3175at 476.251 kb on + strand, within EX28DRAFT_3175at 476.362 kb on + strand, within EX28DRAFT_3175at 476.454 kb on + strandat 476.519 kb on - strandat 476.527 kb on + strandat 476.527 kb on + strandat 476.528 kb on - strandat 476.528 kb on - strandat 476.531 kb on + strandat 476.532 kb on - strandat 476.662 kb on + strandat 476.942 kb on + strand, within EX28DRAFT_3176at 476.942 kb on + strand, within EX28DRAFT_3176at 476.942 kb on + strand, within EX28DRAFT_3176at 476.973 kb on + strand, within EX28DRAFT_3176at 477.168 kb on + strand, within EX28DRAFT_3176at 477.203 kb on + strand, within EX28DRAFT_3176at 477.323 kb on - strand, within EX28DRAFT_3176at 477.400 kb on + strand, within EX28DRAFT_3176at 477.400 kb on + strand, within EX28DRAFT_3176at 477.442 kb on - strand, within EX28DRAFT_3176at 477.505 kb on + strand, within EX28DRAFT_3176at 477.509 kb on + strand, within EX28DRAFT_3176

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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473,402 + EX28DRAFT_3173 0.59 -3.2
473,436 - EX28DRAFT_3173 0.64 -0.4
473,441 + EX28DRAFT_3173 0.64 -2.1
473,533 - EX28DRAFT_3173 0.77 -0.8
473,536 + EX28DRAFT_3173 0.78 -1.4
473,537 - EX28DRAFT_3173 0.78 -1.8
473,537 - EX28DRAFT_3173 0.78 -3.6
473,543 + EX28DRAFT_3173 0.79 -3.7
473,558 - EX28DRAFT_3173 0.81 -1.8
473,695 + -0.0
473,696 - +0.9
473,813 + +0.7
473,823 - EX28DRAFT_3174 0.10 -2.8
473,861 - EX28DRAFT_3174 0.19 +0.5
473,861 - EX28DRAFT_3174 0.19 +0.3
473,863 + EX28DRAFT_3174 0.20 -2.0
474,002 + EX28DRAFT_3174 0.54 +0.4
474,003 - EX28DRAFT_3174 0.54 -0.6
474,003 - EX28DRAFT_3174 0.54 -1.1
474,003 - EX28DRAFT_3174 0.54 +0.8
474,048 - EX28DRAFT_3174 0.65 +0.1
474,194 + +0.7
474,195 - +0.2
474,195 - +0.3
474,195 - +0.4
474,203 + -1.7
474,203 + +0.7
474,203 + +0.2
474,203 + -0.9
474,204 - +0.1
474,204 - +1.4
474,204 - +0.3
474,204 - -0.6
474,204 - +0.3
474,204 - +0.5
474,231 + +0.1
474,255 + +0.7
474,256 - +0.2
474,256 - +1.0
474,256 - -2.5
474,256 - +0.4
474,256 - +1.4
474,256 - -1.7
474,256 - +0.0
474,266 - -1.4
474,266 - +1.8
474,269 + -0.8
474,270 - -0.8
474,270 - +0.3
474,270 - -0.0
474,270 - -0.9
474,270 - -0.1
474,271 + +0.0
474,273 + -0.2
474,351 - +2.3
474,632 - EX28DRAFT_3175 0.13 -0.7
474,632 - EX28DRAFT_3175 0.13 +1.0
474,652 + EX28DRAFT_3175 0.13 -0.4
474,653 - EX28DRAFT_3175 0.13 +2.9
474,872 + EX28DRAFT_3175 0.23 -0.7
474,929 - EX28DRAFT_3175 0.25 -0.6
475,004 - EX28DRAFT_3175 0.29 -0.0
475,004 - EX28DRAFT_3175 0.29 -0.2
475,108 + EX28DRAFT_3175 0.33 +1.4
475,108 + EX28DRAFT_3175 0.33 -0.2
475,114 + EX28DRAFT_3175 0.34 -0.7
475,115 - EX28DRAFT_3175 0.34 +0.6
475,115 - EX28DRAFT_3175 0.34 +0.9
475,118 + EX28DRAFT_3175 0.34 -0.4
475,119 - EX28DRAFT_3175 0.34 +0.2
475,119 - EX28DRAFT_3175 0.34 -2.5
475,129 + EX28DRAFT_3175 0.34 +0.4
475,156 + EX28DRAFT_3175 0.35 +1.2
475,157 - EX28DRAFT_3175 0.35 +0.8
475,179 - EX28DRAFT_3175 0.36 -0.1
475,211 - EX28DRAFT_3175 0.38 +0.4
475,211 - EX28DRAFT_3175 0.38 +0.2
475,385 - EX28DRAFT_3175 0.45 -0.1
475,569 - EX28DRAFT_3175 0.53 -2.6
475,768 + EX28DRAFT_3175 0.62 -0.1
475,768 + EX28DRAFT_3175 0.62 +0.5
475,768 + EX28DRAFT_3175 0.62 +1.8
475,769 - EX28DRAFT_3175 0.62 +0.8
475,769 - EX28DRAFT_3175 0.62 +0.6
475,769 - EX28DRAFT_3175 0.62 -1.9
475,849 + EX28DRAFT_3175 0.66 +0.5
475,906 + EX28DRAFT_3175 0.68 -1.1
475,906 + EX28DRAFT_3175 0.68 -3.2
476,024 + EX28DRAFT_3175 0.73 -1.4
476,066 - EX28DRAFT_3175 0.75 +0.0
476,221 + EX28DRAFT_3175 0.82 +0.6
476,251 + EX28DRAFT_3175 0.83 -0.4
476,362 + EX28DRAFT_3175 0.88 +4.7
476,454 + -0.5
476,519 - -0.4
476,527 + -0.1
476,527 + +1.4
476,528 - +1.1
476,528 - -2.3
476,531 + +2.9
476,532 - +1.9
476,662 + +0.4
476,942 + EX28DRAFT_3176 0.24 +0.9
476,942 + EX28DRAFT_3176 0.24 -1.4
476,942 + EX28DRAFT_3176 0.24 -0.0
476,973 + EX28DRAFT_3176 0.26 +1.4
477,168 + EX28DRAFT_3176 0.42 -3.3
477,203 + EX28DRAFT_3176 0.45 -0.4
477,323 - EX28DRAFT_3176 0.55 +0.7
477,400 + EX28DRAFT_3176 0.62 -0.1
477,400 + EX28DRAFT_3176 0.62 -0.5
477,442 - EX28DRAFT_3176 0.65 -0.4
477,505 + EX28DRAFT_3176 0.70 -0.4
477,509 + EX28DRAFT_3176 0.71 -0.1

Or see this region's nucleotide sequence