Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3172 and EX28DRAFT_3173 are separated by 104 nucleotides EX28DRAFT_3173 and EX28DRAFT_3174 are separated by 90 nucleotides EX28DRAFT_3174 and EX28DRAFT_3175 are separated by 153 nucleotides
EX28DRAFT_3172: EX28DRAFT_3172 - Transcriptional regulator, at 471,982 to 472,884
_3172
EX28DRAFT_3173: EX28DRAFT_3173 - Pirin-related protein, at 472,989 to 473,690
_3173
EX28DRAFT_3174: EX28DRAFT_3174 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 473,781 to 474,191
_3174
EX28DRAFT_3175: EX28DRAFT_3175 - formate acetyltransferase 1, at 474,345 to 476,639
_3175
Position (kb) 472
473
474 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 471.991 kb on - strand at 471.991 kb on - strand at 471.991 kb on - strand at 471.992 kb on + strand at 471.993 kb on - strand at 471.993 kb on - strand at 471.993 kb on - strand at 472.072 kb on - strand at 472.072 kb on - strand at 472.092 kb on - strand, within EX28DRAFT_3172 at 472.230 kb on + strand, within EX28DRAFT_3172 at 472.296 kb on - strand, within EX28DRAFT_3172 at 472.365 kb on - strand, within EX28DRAFT_3172 at 472.383 kb on - strand, within EX28DRAFT_3172 at 472.582 kb on + strand, within EX28DRAFT_3172 at 472.583 kb on - strand, within EX28DRAFT_3172 at 472.583 kb on - strand, within EX28DRAFT_3172 at 472.583 kb on - strand, within EX28DRAFT_3172 at 472.766 kb on + strand, within EX28DRAFT_3172 at 472.766 kb on + strand, within EX28DRAFT_3172 at 472.878 kb on + strand at 472.966 kb on + strand at 472.971 kb on + strand at 472.989 kb on - strand at 472.989 kb on - strand at 472.995 kb on - strand at 473.010 kb on - strand at 473.073 kb on + strand, within EX28DRAFT_3173 at 473.073 kb on + strand, within EX28DRAFT_3173 at 473.074 kb on - strand, within EX28DRAFT_3173 at 473.074 kb on - strand, within EX28DRAFT_3173 at 473.159 kb on + strand, within EX28DRAFT_3173 at 473.160 kb on - strand, within EX28DRAFT_3173 at 473.212 kb on - strand, within EX28DRAFT_3173 at 473.212 kb on - strand, within EX28DRAFT_3173 at 473.300 kb on + strand, within EX28DRAFT_3173 at 473.402 kb on + strand, within EX28DRAFT_3173 at 473.436 kb on - strand, within EX28DRAFT_3173 at 473.441 kb on + strand, within EX28DRAFT_3173 at 473.533 kb on - strand, within EX28DRAFT_3173 at 473.536 kb on + strand, within EX28DRAFT_3173 at 473.537 kb on - strand, within EX28DRAFT_3173 at 473.537 kb on - strand, within EX28DRAFT_3173 at 473.543 kb on + strand, within EX28DRAFT_3173 at 473.558 kb on - strand, within EX28DRAFT_3173 at 473.695 kb on + strand at 473.696 kb on - strand at 473.813 kb on + strand at 473.823 kb on - strand, within EX28DRAFT_3174 at 473.861 kb on - strand, within EX28DRAFT_3174 at 473.861 kb on - strand, within EX28DRAFT_3174 at 473.863 kb on + strand, within EX28DRAFT_3174 at 474.002 kb on + strand, within EX28DRAFT_3174 at 474.003 kb on - strand, within EX28DRAFT_3174 at 474.003 kb on - strand, within EX28DRAFT_3174 at 474.003 kb on - strand, within EX28DRAFT_3174 at 474.048 kb on - strand, within EX28DRAFT_3174 at 474.194 kb on + strand at 474.195 kb on - strand at 474.195 kb on - strand at 474.195 kb on - strand at 474.203 kb on + strand at 474.203 kb on + strand at 474.203 kb on + strand at 474.203 kb on + strand at 474.204 kb on - strand at 474.204 kb on - strand at 474.204 kb on - strand at 474.204 kb on - strand at 474.204 kb on - strand at 474.204 kb on - strand at 474.231 kb on + strand at 474.255 kb on + strand at 474.256 kb on - strand at 474.256 kb on - strand at 474.256 kb on - strand at 474.256 kb on - strand at 474.256 kb on - strand at 474.256 kb on - strand at 474.256 kb on - strand at 474.266 kb on - strand at 474.266 kb on - strand at 474.269 kb on + strand at 474.270 kb on - strand at 474.270 kb on - strand at 474.270 kb on - strand at 474.270 kb on - strand at 474.270 kb on - strand at 474.271 kb on + strand at 474.273 kb on + strand at 474.351 kb on - strand at 474.632 kb on - strand, within EX28DRAFT_3175 at 474.632 kb on - strand, within EX28DRAFT_3175 at 474.652 kb on + strand, within EX28DRAFT_3175 at 474.653 kb on - strand, within EX28DRAFT_3175
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 471,991 - +2.1 471,991 - +0.5 471,991 - -1.7 471,992 + +5.5 471,993 - +0.2 471,993 - +1.1 471,993 - +0.6 472,072 - -2.6 472,072 - -2.9 472,092 - EX28DRAFT_3172 0.12 -3.8 472,230 + EX28DRAFT_3172 0.27 -2.3 472,296 - EX28DRAFT_3172 0.35 -4.6 472,365 - EX28DRAFT_3172 0.42 -3.1 472,383 - EX28DRAFT_3172 0.44 -4.8 472,582 + EX28DRAFT_3172 0.66 -3.2 472,583 - EX28DRAFT_3172 0.67 -4.9 472,583 - EX28DRAFT_3172 0.67 -2.4 472,583 - EX28DRAFT_3172 0.67 -2.7 472,766 + EX28DRAFT_3172 0.87 -4.0 472,766 + EX28DRAFT_3172 0.87 -3.9 472,878 + -4.7 472,966 + -0.5 472,971 + -0.6 472,989 - -2.2 472,989 - -1.9 472,995 - -0.5 473,010 - +0.2 473,073 + EX28DRAFT_3173 0.12 +4.2 473,073 + EX28DRAFT_3173 0.12 -1.6 473,074 - EX28DRAFT_3173 0.12 -1.0 473,074 - EX28DRAFT_3173 0.12 -4.8 473,159 + EX28DRAFT_3173 0.24 -2.4 473,160 - EX28DRAFT_3173 0.24 -3.4 473,212 - EX28DRAFT_3173 0.32 -2.8 473,212 - EX28DRAFT_3173 0.32 -3.1 473,300 + EX28DRAFT_3173 0.44 -0.8 473,402 + EX28DRAFT_3173 0.59 -3.2 473,436 - EX28DRAFT_3173 0.64 -0.4 473,441 + EX28DRAFT_3173 0.64 -2.1 473,533 - EX28DRAFT_3173 0.77 -0.8 473,536 + EX28DRAFT_3173 0.78 -1.4 473,537 - EX28DRAFT_3173 0.78 -1.8 473,537 - EX28DRAFT_3173 0.78 -3.6 473,543 + EX28DRAFT_3173 0.79 -3.7 473,558 - EX28DRAFT_3173 0.81 -1.8 473,695 + -0.0 473,696 - +0.9 473,813 + +0.7 473,823 - EX28DRAFT_3174 0.10 -2.8 473,861 - EX28DRAFT_3174 0.19 +0.5 473,861 - EX28DRAFT_3174 0.19 +0.3 473,863 + EX28DRAFT_3174 0.20 -2.0 474,002 + EX28DRAFT_3174 0.54 +0.4 474,003 - EX28DRAFT_3174 0.54 -0.6 474,003 - EX28DRAFT_3174 0.54 -1.1 474,003 - EX28DRAFT_3174 0.54 +0.8 474,048 - EX28DRAFT_3174 0.65 +0.1 474,194 + +0.7 474,195 - +0.2 474,195 - +0.3 474,195 - +0.4 474,203 + -1.7 474,203 + +0.7 474,203 + +0.2 474,203 + -0.9 474,204 - +0.1 474,204 - +1.4 474,204 - +0.3 474,204 - -0.6 474,204 - +0.3 474,204 - +0.5 474,231 + +0.1 474,255 + +0.7 474,256 - +0.2 474,256 - +1.0 474,256 - -2.5 474,256 - +0.4 474,256 - +1.4 474,256 - -1.7 474,256 - +0.0 474,266 - -1.4 474,266 - +1.8 474,269 + -0.8 474,270 - -0.8 474,270 - +0.3 474,270 - -0.0 474,270 - -0.9 474,270 - -0.1 474,271 + +0.0 474,273 + -0.2 474,351 - +2.3 474,632 - EX28DRAFT_3175 0.13 -0.7 474,632 - EX28DRAFT_3175 0.13 +1.0 474,652 + EX28DRAFT_3175 0.13 -0.4 474,653 - EX28DRAFT_3175 0.13 +2.9
Or see this region's nucleotide sequence