Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3172

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3170 and EX28DRAFT_3171 are separated by 106 nucleotidesEX28DRAFT_3171 and EX28DRAFT_3172 are separated by 46 nucleotidesEX28DRAFT_3172 and EX28DRAFT_3173 are separated by 104 nucleotidesEX28DRAFT_3173 and EX28DRAFT_3174 are separated by 90 nucleotides EX28DRAFT_3170: EX28DRAFT_3170 - Predicted glutathione S-transferase, at 470,477 to 471,463 _3170 EX28DRAFT_3171: EX28DRAFT_3171 - Predicted membrane protein, at 471,570 to 471,935 _3171 EX28DRAFT_3172: EX28DRAFT_3172 - Transcriptional regulator, at 471,982 to 472,884 _3172 EX28DRAFT_3173: EX28DRAFT_3173 - Pirin-related protein, at 472,989 to 473,690 _3173 EX28DRAFT_3174: EX28DRAFT_3174 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 473,781 to 474,191 _3174 Position (kb) 471 472 473Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 470.984 kb on + strand, within EX28DRAFT_3170at 471.092 kb on + strand, within EX28DRAFT_3170at 471.093 kb on - strand, within EX28DRAFT_3170at 471.233 kb on + strand, within EX28DRAFT_3170at 471.234 kb on - strand, within EX28DRAFT_3170at 471.247 kb on + strand, within EX28DRAFT_3170at 471.248 kb on - strand, within EX28DRAFT_3170at 471.276 kb on - strand, within EX28DRAFT_3170at 471.308 kb on + strand, within EX28DRAFT_3170at 471.397 kb on + strandat 471.400 kb on + strandat 471.400 kb on + strandat 471.401 kb on - strandat 471.401 kb on - strandat 471.401 kb on - strandat 471.401 kb on - strandat 471.465 kb on + strandat 471.465 kb on + strandat 471.466 kb on - strandat 471.466 kb on - strandat 471.513 kb on - strandat 471.584 kb on - strandat 471.590 kb on - strandat 471.600 kb on + strandat 471.601 kb on - strandat 471.601 kb on - strandat 471.601 kb on - strandat 471.637 kb on - strand, within EX28DRAFT_3171at 471.744 kb on + strand, within EX28DRAFT_3171at 471.745 kb on - strand, within EX28DRAFT_3171at 471.968 kb on + strandat 471.976 kb on - strandat 471.991 kb on - strandat 471.991 kb on - strandat 471.991 kb on - strandat 471.992 kb on + strandat 471.993 kb on - strandat 471.993 kb on - strandat 471.993 kb on - strandat 472.072 kb on - strandat 472.072 kb on - strandat 472.092 kb on - strand, within EX28DRAFT_3172at 472.230 kb on + strand, within EX28DRAFT_3172at 472.296 kb on - strand, within EX28DRAFT_3172at 472.365 kb on - strand, within EX28DRAFT_3172at 472.383 kb on - strand, within EX28DRAFT_3172at 472.582 kb on + strand, within EX28DRAFT_3172at 472.583 kb on - strand, within EX28DRAFT_3172at 472.583 kb on - strand, within EX28DRAFT_3172at 472.583 kb on - strand, within EX28DRAFT_3172at 472.766 kb on + strand, within EX28DRAFT_3172at 472.766 kb on + strand, within EX28DRAFT_3172at 472.878 kb on + strandat 472.966 kb on + strandat 472.971 kb on + strandat 472.989 kb on - strandat 472.989 kb on - strandat 472.995 kb on - strandat 473.010 kb on - strandat 473.073 kb on + strand, within EX28DRAFT_3173at 473.073 kb on + strand, within EX28DRAFT_3173at 473.074 kb on - strand, within EX28DRAFT_3173at 473.074 kb on - strand, within EX28DRAFT_3173at 473.159 kb on + strand, within EX28DRAFT_3173at 473.160 kb on - strand, within EX28DRAFT_3173at 473.212 kb on - strand, within EX28DRAFT_3173at 473.212 kb on - strand, within EX28DRAFT_3173at 473.300 kb on + strand, within EX28DRAFT_3173at 473.402 kb on + strand, within EX28DRAFT_3173at 473.436 kb on - strand, within EX28DRAFT_3173at 473.441 kb on + strand, within EX28DRAFT_3173at 473.533 kb on - strand, within EX28DRAFT_3173at 473.536 kb on + strand, within EX28DRAFT_3173at 473.537 kb on - strand, within EX28DRAFT_3173at 473.537 kb on - strand, within EX28DRAFT_3173at 473.543 kb on + strand, within EX28DRAFT_3173at 473.558 kb on - strand, within EX28DRAFT_3173at 473.695 kb on + strandat 473.696 kb on - strandat 473.813 kb on + strandat 473.823 kb on - strand, within EX28DRAFT_3174at 473.861 kb on - strand, within EX28DRAFT_3174at 473.861 kb on - strand, within EX28DRAFT_3174at 473.863 kb on + strand, within EX28DRAFT_3174

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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470,984 + EX28DRAFT_3170 0.51 +0.9
471,092 + EX28DRAFT_3170 0.62 -2.4
471,093 - EX28DRAFT_3170 0.62 +0.5
471,233 + EX28DRAFT_3170 0.77 -1.1
471,234 - EX28DRAFT_3170 0.77 +1.2
471,247 + EX28DRAFT_3170 0.78 -0.3
471,248 - EX28DRAFT_3170 0.78 -0.8
471,276 - EX28DRAFT_3170 0.81 +1.9
471,308 + EX28DRAFT_3170 0.84 +0.0
471,397 + +0.3
471,400 + +0.3
471,400 + +0.8
471,401 - +0.4
471,401 - -0.4
471,401 - +0.1
471,401 - -0.9
471,465 + -1.4
471,465 + +0.3
471,466 - +3.5
471,466 - +0.1
471,513 - +0.9
471,584 - +0.0
471,590 - -1.0
471,600 + -1.7
471,601 - -1.0
471,601 - -0.5
471,601 - -0.7
471,637 - EX28DRAFT_3171 0.18 +0.1
471,744 + EX28DRAFT_3171 0.48 +0.0
471,745 - EX28DRAFT_3171 0.48 -3.0
471,968 + -1.7
471,976 - +0.2
471,991 - +2.1
471,991 - +0.5
471,991 - -1.7
471,992 + +5.5
471,993 - +0.2
471,993 - +1.1
471,993 - +0.6
472,072 - -2.6
472,072 - -2.9
472,092 - EX28DRAFT_3172 0.12 -3.8
472,230 + EX28DRAFT_3172 0.27 -2.3
472,296 - EX28DRAFT_3172 0.35 -4.6
472,365 - EX28DRAFT_3172 0.42 -3.1
472,383 - EX28DRAFT_3172 0.44 -4.8
472,582 + EX28DRAFT_3172 0.66 -3.2
472,583 - EX28DRAFT_3172 0.67 -4.9
472,583 - EX28DRAFT_3172 0.67 -2.4
472,583 - EX28DRAFT_3172 0.67 -2.7
472,766 + EX28DRAFT_3172 0.87 -4.0
472,766 + EX28DRAFT_3172 0.87 -3.9
472,878 + -4.7
472,966 + -0.5
472,971 + -0.6
472,989 - -2.2
472,989 - -1.9
472,995 - -0.5
473,010 - +0.2
473,073 + EX28DRAFT_3173 0.12 +4.2
473,073 + EX28DRAFT_3173 0.12 -1.6
473,074 - EX28DRAFT_3173 0.12 -1.0
473,074 - EX28DRAFT_3173 0.12 -4.8
473,159 + EX28DRAFT_3173 0.24 -2.4
473,160 - EX28DRAFT_3173 0.24 -3.4
473,212 - EX28DRAFT_3173 0.32 -2.8
473,212 - EX28DRAFT_3173 0.32 -3.1
473,300 + EX28DRAFT_3173 0.44 -0.8
473,402 + EX28DRAFT_3173 0.59 -3.2
473,436 - EX28DRAFT_3173 0.64 -0.4
473,441 + EX28DRAFT_3173 0.64 -2.1
473,533 - EX28DRAFT_3173 0.77 -0.8
473,536 + EX28DRAFT_3173 0.78 -1.4
473,537 - EX28DRAFT_3173 0.78 -1.8
473,537 - EX28DRAFT_3173 0.78 -3.6
473,543 + EX28DRAFT_3173 0.79 -3.7
473,558 - EX28DRAFT_3173 0.81 -1.8
473,695 + -0.0
473,696 - +0.9
473,813 + +0.7
473,823 - EX28DRAFT_3174 0.10 -2.8
473,861 - EX28DRAFT_3174 0.19 +0.5
473,861 - EX28DRAFT_3174 0.19 +0.3
473,863 + EX28DRAFT_3174 0.20 -2.0

Or see this region's nucleotide sequence