Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3160

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3159 and EX28DRAFT_3160 are separated by 17 nucleotidesEX28DRAFT_3160 and EX28DRAFT_3161 are separated by 475 nucleotides EX28DRAFT_3159: EX28DRAFT_3159 - Altronate dehydratase, at 461,245 to 462,732 _3159 EX28DRAFT_3160: EX28DRAFT_3160 - Glucuronate isomerase, at 462,750 to 464,162 _3160 EX28DRAFT_3161: EX28DRAFT_3161 - D-galactonate transporter, at 464,638 to 465,936 _3161 Position (kb) 462 463 464 465Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 461.814 kb on + strand, within EX28DRAFT_3159at 461.875 kb on + strand, within EX28DRAFT_3159at 461.875 kb on + strand, within EX28DRAFT_3159at 461.876 kb on - strand, within EX28DRAFT_3159at 461.879 kb on + strand, within EX28DRAFT_3159at 462.009 kb on - strand, within EX28DRAFT_3159at 462.069 kb on + strand, within EX28DRAFT_3159at 462.242 kb on + strand, within EX28DRAFT_3159at 462.242 kb on + strand, within EX28DRAFT_3159at 462.243 kb on - strand, within EX28DRAFT_3159at 462.243 kb on - strand, within EX28DRAFT_3159at 462.401 kb on + strand, within EX28DRAFT_3159at 462.458 kb on + strand, within EX28DRAFT_3159at 462.459 kb on - strand, within EX28DRAFT_3159at 462.464 kb on + strand, within EX28DRAFT_3159at 462.464 kb on + strand, within EX28DRAFT_3159at 462.465 kb on - strand, within EX28DRAFT_3159at 462.465 kb on - strand, within EX28DRAFT_3159at 462.496 kb on - strand, within EX28DRAFT_3159at 462.512 kb on + strand, within EX28DRAFT_3159at 462.513 kb on - strand, within EX28DRAFT_3159at 462.725 kb on + strandat 462.726 kb on - strandat 462.726 kb on - strandat 462.726 kb on - strandat 462.733 kb on - strandat 462.772 kb on + strandat 462.789 kb on - strandat 462.825 kb on + strandat 462.826 kb on - strandat 462.826 kb on - strandat 462.907 kb on + strand, within EX28DRAFT_3160at 462.907 kb on + strand, within EX28DRAFT_3160at 462.908 kb on - strand, within EX28DRAFT_3160at 463.117 kb on + strand, within EX28DRAFT_3160at 463.118 kb on - strand, within EX28DRAFT_3160at 463.434 kb on + strand, within EX28DRAFT_3160at 463.434 kb on + strand, within EX28DRAFT_3160at 463.435 kb on - strand, within EX28DRAFT_3160at 463.564 kb on + strand, within EX28DRAFT_3160at 463.565 kb on - strand, within EX28DRAFT_3160at 463.861 kb on + strand, within EX28DRAFT_3160at 463.862 kb on - strand, within EX28DRAFT_3160at 463.985 kb on - strand, within EX28DRAFT_3160at 464.105 kb on - strandat 464.130 kb on + strandat 464.131 kb on - strandat 464.131 kb on - strandat 464.197 kb on + strandat 464.198 kb on - strandat 464.198 kb on - strandat 464.369 kb on - strandat 464.433 kb on - strandat 464.434 kb on + strandat 464.496 kb on + strandat 464.506 kb on + strandat 464.506 kb on + strandat 464.507 kb on - strandat 464.507 kb on - strandat 464.507 kb on - strandat 464.510 kb on + strandat 464.511 kb on - strandat 464.665 kb on + strandat 464.666 kb on - strandat 464.667 kb on + strandat 464.760 kb on + strandat 464.760 kb on + strandat 464.776 kb on + strand, within EX28DRAFT_3161at 464.777 kb on - strand, within EX28DRAFT_3161at 464.782 kb on + strand, within EX28DRAFT_3161at 464.782 kb on + strand, within EX28DRAFT_3161at 464.782 kb on + strand, within EX28DRAFT_3161at 464.782 kb on + strand, within EX28DRAFT_3161at 464.782 kb on + strand, within EX28DRAFT_3161at 464.798 kb on - strand, within EX28DRAFT_3161at 464.809 kb on + strand, within EX28DRAFT_3161at 464.811 kb on + strand, within EX28DRAFT_3161at 464.836 kb on + strand, within EX28DRAFT_3161at 464.836 kb on + strand, within EX28DRAFT_3161at 465.084 kb on - strand, within EX28DRAFT_3161

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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461,814 + EX28DRAFT_3159 0.38 +0.1
461,875 + EX28DRAFT_3159 0.42 +0.4
461,875 + EX28DRAFT_3159 0.42 +2.8
461,876 - EX28DRAFT_3159 0.42 -3.8
461,879 + EX28DRAFT_3159 0.43 +0.0
462,009 - EX28DRAFT_3159 0.51 -0.0
462,069 + EX28DRAFT_3159 0.55 -0.3
462,242 + EX28DRAFT_3159 0.67 +1.5
462,242 + EX28DRAFT_3159 0.67 +0.8
462,243 - EX28DRAFT_3159 0.67 +4.0
462,243 - EX28DRAFT_3159 0.67 +0.1
462,401 + EX28DRAFT_3159 0.78 +0.5
462,458 + EX28DRAFT_3159 0.82 +1.3
462,459 - EX28DRAFT_3159 0.82 +0.2
462,464 + EX28DRAFT_3159 0.82 -1.3
462,464 + EX28DRAFT_3159 0.82 +2.4
462,465 - EX28DRAFT_3159 0.82 -1.3
462,465 - EX28DRAFT_3159 0.82 +0.0
462,496 - EX28DRAFT_3159 0.84 -2.3
462,512 + EX28DRAFT_3159 0.85 +1.2
462,513 - EX28DRAFT_3159 0.85 -2.0
462,725 + -0.2
462,726 - -1.0
462,726 - +0.5
462,726 - +0.4
462,733 - -1.7
462,772 + -0.8
462,789 - +0.3
462,825 + +0.6
462,826 - +1.5
462,826 - -0.5
462,907 + EX28DRAFT_3160 0.11 +2.5
462,907 + EX28DRAFT_3160 0.11 +0.7
462,908 - EX28DRAFT_3160 0.11 -0.6
463,117 + EX28DRAFT_3160 0.26 +0.7
463,118 - EX28DRAFT_3160 0.26 -0.0
463,434 + EX28DRAFT_3160 0.48 -0.4
463,434 + EX28DRAFT_3160 0.48 +1.2
463,435 - EX28DRAFT_3160 0.48 -0.1
463,564 + EX28DRAFT_3160 0.58 +0.3
463,565 - EX28DRAFT_3160 0.58 +0.2
463,861 + EX28DRAFT_3160 0.79 +0.9
463,862 - EX28DRAFT_3160 0.79 -1.9
463,985 - EX28DRAFT_3160 0.87 +0.2
464,105 - +1.7
464,130 + +1.1
464,131 - +0.8
464,131 - +0.0
464,197 + -0.6
464,198 - -0.6
464,198 - -0.1
464,369 - -0.7
464,433 - -0.7
464,434 + +0.5
464,496 + -2.0
464,506 + +1.8
464,506 + -1.2
464,507 - +0.0
464,507 - +1.1
464,507 - +0.0
464,510 + -0.4
464,511 - -0.1
464,665 + +0.2
464,666 - -0.1
464,667 + +0.3
464,760 + +1.4
464,760 + +1.5
464,776 + EX28DRAFT_3161 0.11 -1.4
464,777 - EX28DRAFT_3161 0.11 -3.0
464,782 + EX28DRAFT_3161 0.11 -3.6
464,782 + EX28DRAFT_3161 0.11 -0.8
464,782 + EX28DRAFT_3161 0.11 +0.4
464,782 + EX28DRAFT_3161 0.11 -1.1
464,782 + EX28DRAFT_3161 0.11 -1.6
464,798 - EX28DRAFT_3161 0.12 -0.2
464,809 + EX28DRAFT_3161 0.13 +0.3
464,811 + EX28DRAFT_3161 0.13 +0.5
464,836 + EX28DRAFT_3161 0.15 -1.0
464,836 + EX28DRAFT_3161 0.15 -1.2
465,084 - EX28DRAFT_3161 0.34 +0.5

Or see this region's nucleotide sequence