Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3153 and EX28DRAFT_3154 are separated by 83 nucleotides EX28DRAFT_3154 and EX28DRAFT_3155 are separated by 70 nucleotides EX28DRAFT_3155 and EX28DRAFT_3156 are separated by 56 nucleotides EX28DRAFT_3156 and EX28DRAFT_3157 are separated by 80 nucleotides
EX28DRAFT_3153: EX28DRAFT_3153 - 16S RNA G1207 methylase RsmC, at 455,634 to 456,770
_3153
EX28DRAFT_3154: EX28DRAFT_3154 - Predicted metal-dependent hydrolase, at 456,854 to 457,357
_3154
EX28DRAFT_3155: EX28DRAFT_3155 - Predicted dehydrogenases and related proteins, at 457,428 to 458,426
_3155
EX28DRAFT_3156: EX28DRAFT_3156 - RNA, at 458,483 to 458,596
_3156
EX28DRAFT_3157: EX28DRAFT_3157 - integral membrane protein, TerC family, at 458,677 to 459,645
_3157
Position (kb) 457
458
459 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 456.569 kb on - strand, within EX28DRAFT_3153 at 456.670 kb on + strand at 456.670 kb on + strand at 456.671 kb on - strand at 456.760 kb on - strand at 456.760 kb on - strand at 456.787 kb on + strand at 456.822 kb on + strand at 456.823 kb on - strand at 456.833 kb on + strand at 456.865 kb on + strand at 456.866 kb on - strand at 456.866 kb on - strand at 456.866 kb on - strand at 456.866 kb on - strand at 456.870 kb on - strand at 456.870 kb on - strand at 456.870 kb on - strand at 456.895 kb on - strand at 457.002 kb on - strand, within EX28DRAFT_3154 at 457.003 kb on + strand, within EX28DRAFT_3154 at 457.004 kb on - strand, within EX28DRAFT_3154 at 457.061 kb on + strand, within EX28DRAFT_3154 at 457.260 kb on - strand, within EX28DRAFT_3154 at 457.260 kb on - strand, within EX28DRAFT_3154 at 457.385 kb on + strand at 457.385 kb on + strand at 457.386 kb on - strand at 457.386 kb on - strand at 457.386 kb on - strand at 457.386 kb on - strand at 457.386 kb on - strand at 457.416 kb on - strand at 457.420 kb on - strand at 457.427 kb on + strand at 457.427 kb on + strand at 457.432 kb on + strand at 457.505 kb on + strand at 457.505 kb on + strand at 457.506 kb on - strand at 457.506 kb on - strand at 457.521 kb on + strand at 457.522 kb on - strand at 457.629 kb on + strand, within EX28DRAFT_3155 at 457.629 kb on + strand, within EX28DRAFT_3155 at 457.630 kb on - strand, within EX28DRAFT_3155 at 457.630 kb on - strand, within EX28DRAFT_3155 at 457.631 kb on + strand, within EX28DRAFT_3155 at 457.931 kb on + strand, within EX28DRAFT_3155 at 457.955 kb on + strand, within EX28DRAFT_3155 at 457.956 kb on - strand, within EX28DRAFT_3155 at 457.956 kb on - strand, within EX28DRAFT_3155 at 457.958 kb on + strand, within EX28DRAFT_3155 at 457.959 kb on - strand, within EX28DRAFT_3155 at 458.252 kb on + strand, within EX28DRAFT_3155 at 458.253 kb on - strand, within EX28DRAFT_3155 at 458.256 kb on - strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.262 kb on - strand, within EX28DRAFT_3155 at 458.268 kb on + strand, within EX28DRAFT_3155 at 458.268 kb on + strand, within EX28DRAFT_3155 at 458.477 kb on + strand at 458.478 kb on - strand at 458.485 kb on + strand at 458.502 kb on - strand, within EX28DRAFT_3156 at 458.527 kb on + strand, within EX28DRAFT_3156 at 458.527 kb on + strand, within EX28DRAFT_3156 at 458.575 kb on + strand, within EX28DRAFT_3156 at 458.575 kb on + strand, within EX28DRAFT_3156 at 458.576 kb on - strand, within EX28DRAFT_3156 at 458.604 kb on + strand at 458.604 kb on + strand at 458.604 kb on + strand at 458.604 kb on + strand at 458.605 kb on - strand at 458.605 kb on - strand at 458.605 kb on - strand at 458.610 kb on + strand at 458.611 kb on - strand at 458.658 kb on + strand at 458.658 kb on + strand at 458.659 kb on - strand at 458.673 kb on + strand at 458.673 kb on + strand at 458.676 kb on + strand at 458.860 kb on + strand, within EX28DRAFT_3157 at 458.860 kb on + strand, within EX28DRAFT_3157 at 459.026 kb on - strand, within EX28DRAFT_3157
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 456,569 - EX28DRAFT_3153 0.82 -2.3 456,670 + -0.7 456,670 + -1.3 456,671 - -0.6 456,760 - +0.5 456,760 - -0.3 456,787 + -0.0 456,822 + -1.0 456,823 - -0.6 456,833 + -0.8 456,865 + +0.8 456,866 - +0.8 456,866 - -0.5 456,866 - -1.1 456,866 - -0.1 456,870 - -2.0 456,870 - -0.7 456,870 - -0.1 456,895 - -0.8 457,002 - EX28DRAFT_3154 0.29 -0.6 457,003 + EX28DRAFT_3154 0.30 +0.5 457,004 - EX28DRAFT_3154 0.30 +0.1 457,061 + EX28DRAFT_3154 0.41 +1.2 457,260 - EX28DRAFT_3154 0.81 +0.4 457,260 - EX28DRAFT_3154 0.81 -0.6 457,385 + +0.3 457,385 + +0.8 457,386 - +2.0 457,386 - +0.3 457,386 - -2.2 457,386 - -0.9 457,386 - -0.9 457,416 - -0.2 457,420 - -0.2 457,427 + +0.2 457,427 + +1.4 457,432 + -0.4 457,505 + -1.8 457,505 + +1.9 457,506 - -0.0 457,506 - -0.4 457,521 + -1.0 457,522 - +2.0 457,629 + EX28DRAFT_3155 0.20 -0.6 457,629 + EX28DRAFT_3155 0.20 -2.9 457,630 - EX28DRAFT_3155 0.20 -2.2 457,630 - EX28DRAFT_3155 0.20 +1.3 457,631 + EX28DRAFT_3155 0.20 +0.9 457,931 + EX28DRAFT_3155 0.50 -0.1 457,955 + EX28DRAFT_3155 0.53 +0.5 457,956 - EX28DRAFT_3155 0.53 +0.8 457,956 - EX28DRAFT_3155 0.53 +5.0 457,958 + EX28DRAFT_3155 0.53 +2.6 457,959 - EX28DRAFT_3155 0.53 +0.2 458,252 + EX28DRAFT_3155 0.82 +0.0 458,253 - EX28DRAFT_3155 0.83 +5.4 458,256 - EX28DRAFT_3155 0.83 -1.1 458,261 + EX28DRAFT_3155 0.83 -1.0 458,261 + EX28DRAFT_3155 0.83 +0.0 458,261 + EX28DRAFT_3155 0.83 +1.6 458,261 + EX28DRAFT_3155 0.83 +0.2 458,261 + EX28DRAFT_3155 0.83 +1.4 458,262 - EX28DRAFT_3155 0.83 +0.1 458,268 + EX28DRAFT_3155 0.84 -0.6 458,268 + EX28DRAFT_3155 0.84 +0.9 458,477 + +0.5 458,478 - +0.3 458,485 + +0.2 458,502 - EX28DRAFT_3156 0.17 +0.4 458,527 + EX28DRAFT_3156 0.39 +0.2 458,527 + EX28DRAFT_3156 0.39 +0.1 458,575 + EX28DRAFT_3156 0.81 +0.1 458,575 + EX28DRAFT_3156 0.81 -1.5 458,576 - EX28DRAFT_3156 0.82 -0.5 458,604 + -0.5 458,604 + -0.1 458,604 + +0.2 458,604 + -0.1 458,605 - -1.6 458,605 - +0.5 458,605 - +0.4 458,610 + -4.3 458,611 - -0.2 458,658 + +1.7 458,658 + -1.0 458,659 - -1.2 458,673 + +0.6 458,673 + +0.9 458,676 + -0.3 458,860 + EX28DRAFT_3157 0.19 +0.5 458,860 + EX28DRAFT_3157 0.19 +0.8 459,026 - EX28DRAFT_3157 0.36 -2.2
Or see this region's nucleotide sequence