Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3135 and EX28DRAFT_3136 are separated by 0 nucleotides EX28DRAFT_3136 and EX28DRAFT_3137 are separated by 147 nucleotides EX28DRAFT_3137 and EX28DRAFT_3138 overlap by 4 nucleotides
EX28DRAFT_3135: EX28DRAFT_3135 - hypothetical protein, at 434,737 to 435,906
_3135
EX28DRAFT_3136: EX28DRAFT_3136 - Siderophore-interacting protein, at 435,907 to 436,671
_3136
EX28DRAFT_3137: EX28DRAFT_3137 - Predicted transcriptional regulators, at 436,819 to 437,313
_3137
EX28DRAFT_3138: EX28DRAFT_3138 - Methyl-accepting chemotaxis protein, at 437,310 to 438,869
_3138
Position (kb) 436
437
438 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 436.022 kb on + strand, within EX28DRAFT_3136 at 436.022 kb on + strand, within EX28DRAFT_3136 at 436.023 kb on - strand, within EX28DRAFT_3136 at 436.023 kb on - strand, within EX28DRAFT_3136 at 436.023 kb on - strand, within EX28DRAFT_3136 at 436.124 kb on + strand, within EX28DRAFT_3136 at 436.125 kb on - strand, within EX28DRAFT_3136 at 436.131 kb on + strand, within EX28DRAFT_3136 at 436.132 kb on - strand, within EX28DRAFT_3136 at 436.133 kb on + strand, within EX28DRAFT_3136 at 436.133 kb on + strand, within EX28DRAFT_3136 at 436.134 kb on - strand, within EX28DRAFT_3136 at 436.245 kb on - strand, within EX28DRAFT_3136 at 436.400 kb on + strand, within EX28DRAFT_3136 at 436.412 kb on + strand, within EX28DRAFT_3136 at 436.412 kb on + strand, within EX28DRAFT_3136 at 436.412 kb on + strand, within EX28DRAFT_3136 at 436.432 kb on + strand, within EX28DRAFT_3136 at 436.432 kb on + strand, within EX28DRAFT_3136 at 436.515 kb on + strand, within EX28DRAFT_3136 at 436.638 kb on + strand at 436.662 kb on + strand at 436.663 kb on - strand at 436.663 kb on - strand at 436.695 kb on - strand at 436.702 kb on - strand at 437.213 kb on + strand, within EX28DRAFT_3137 at 437.474 kb on + strand, within EX28DRAFT_3138 at 437.474 kb on + strand, within EX28DRAFT_3138 at 437.475 kb on - strand, within EX28DRAFT_3138 at 437.475 kb on - strand, within EX28DRAFT_3138 at 438.275 kb on + strand, within EX28DRAFT_3138 at 438.309 kb on - strand, within EX28DRAFT_3138
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 436,022 + EX28DRAFT_3136 0.15 -1.1 436,022 + EX28DRAFT_3136 0.15 +0.6 436,023 - EX28DRAFT_3136 0.15 -0.8 436,023 - EX28DRAFT_3136 0.15 -1.4 436,023 - EX28DRAFT_3136 0.15 -1.4 436,124 + EX28DRAFT_3136 0.28 -1.6 436,125 - EX28DRAFT_3136 0.28 +0.2 436,131 + EX28DRAFT_3136 0.29 -1.8 436,132 - EX28DRAFT_3136 0.29 -0.8 436,133 + EX28DRAFT_3136 0.30 -2.1 436,133 + EX28DRAFT_3136 0.30 -1.1 436,134 - EX28DRAFT_3136 0.30 +0.9 436,245 - EX28DRAFT_3136 0.44 -1.6 436,400 + EX28DRAFT_3136 0.64 -4.0 436,412 + EX28DRAFT_3136 0.66 -1.5 436,412 + EX28DRAFT_3136 0.66 +1.1 436,412 + EX28DRAFT_3136 0.66 -2.2 436,432 + EX28DRAFT_3136 0.69 -0.0 436,432 + EX28DRAFT_3136 0.69 +1.0 436,515 + EX28DRAFT_3136 0.79 +1.3 436,638 + -0.8 436,662 + -0.4 436,663 - -0.4 436,663 - +0.8 436,695 - +0.3 436,702 - -1.0 437,213 + EX28DRAFT_3137 0.80 -2.0 437,474 + EX28DRAFT_3138 0.11 -0.0 437,474 + EX28DRAFT_3138 0.11 -1.3 437,475 - EX28DRAFT_3138 0.11 -2.6 437,475 - EX28DRAFT_3138 0.11 -3.7 438,275 + EX28DRAFT_3138 0.62 -0.1 438,309 - EX28DRAFT_3138 0.64 +0.1
Or see this region's nucleotide sequence