Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3103 and EX28DRAFT_3104 are separated by 125 nucleotides EX28DRAFT_3104 and EX28DRAFT_3105 are separated by 81 nucleotides EX28DRAFT_3105 and EX28DRAFT_3106 are separated by 67 nucleotides EX28DRAFT_3106 and EX28DRAFT_3107 overlap by 4 nucleotides EX28DRAFT_3107 and EX28DRAFT_3108 are separated by 11 nucleotides
EX28DRAFT_3103: EX28DRAFT_3103 - G/U mismatch-specific uracil-DNA glycosylase (EC 3.2.2.-), at 413,971 to 414,477
_3103
EX28DRAFT_3104: EX28DRAFT_3104 - tRNA, at 414,603 to 414,678
_3104
EX28DRAFT_3105: EX28DRAFT_3105 - Ogr/Delta-like zinc finger, at 414,760 to 414,960
_3105
EX28DRAFT_3106: EX28DRAFT_3106 - Phage protein D, at 415,028 to 416,182
_3106
EX28DRAFT_3107: EX28DRAFT_3107 - Phage protein U, at 416,179 to 416,643
_3107
EX28DRAFT_3108: EX28DRAFT_3108 - phage tail tape measure protein, TP901 family, core region, at 416,655 to 418,934
_3108
Position (kb) 415
416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 414.144 kb on - strand, within EX28DRAFT_3103 at 414.191 kb on - strand, within EX28DRAFT_3103 at 414.329 kb on - strand, within EX28DRAFT_3103 at 414.354 kb on - strand, within EX28DRAFT_3103 at 414.511 kb on - strand at 414.849 kb on + strand, within EX28DRAFT_3105 at 414.894 kb on + strand, within EX28DRAFT_3105 at 414.905 kb on - strand, within EX28DRAFT_3105 at 414.905 kb on - strand, within EX28DRAFT_3105 at 414.918 kb on + strand, within EX28DRAFT_3105 at 415.018 kb on - strand at 415.046 kb on - strand at 415.079 kb on - strand at 415.090 kb on + strand at 415.090 kb on + strand at 415.232 kb on + strand, within EX28DRAFT_3106 at 415.320 kb on - strand, within EX28DRAFT_3106 at 415.513 kb on - strand, within EX28DRAFT_3106 at 415.628 kb on - strand, within EX28DRAFT_3106 at 415.664 kb on - strand, within EX28DRAFT_3106 at 415.718 kb on - strand, within EX28DRAFT_3106 at 415.921 kb on + strand, within EX28DRAFT_3106 at 415.921 kb on + strand, within EX28DRAFT_3106 at 416.030 kb on - strand, within EX28DRAFT_3106 at 416.081 kb on - strand at 416.125 kb on + strand at 416.126 kb on - strand at 416.132 kb on - strand at 416.132 kb on - strand at 416.284 kb on - strand, within EX28DRAFT_3107 at 416.295 kb on + strand, within EX28DRAFT_3107 at 416.301 kb on + strand, within EX28DRAFT_3107 at 416.317 kb on - strand, within EX28DRAFT_3107 at 416.364 kb on + strand, within EX28DRAFT_3107 at 416.365 kb on - strand, within EX28DRAFT_3107 at 416.396 kb on - strand, within EX28DRAFT_3107 at 416.480 kb on - strand, within EX28DRAFT_3107 at 416.480 kb on - strand, within EX28DRAFT_3107 at 416.480 kb on - strand, within EX28DRAFT_3107 at 416.493 kb on + strand, within EX28DRAFT_3107 at 416.520 kb on - strand, within EX28DRAFT_3107 at 416.594 kb on + strand, within EX28DRAFT_3107 at 416.660 kb on + strand at 416.661 kb on - strand at 416.661 kb on - strand at 416.661 kb on - strand at 416.662 kb on + strand at 416.662 kb on + strand at 416.662 kb on + strand at 416.662 kb on + strand at 416.662 kb on + strand at 416.663 kb on - strand at 416.663 kb on - strand at 416.663 kb on - strand at 416.663 kb on - strand at 416.666 kb on + strand at 416.666 kb on + strand at 416.666 kb on + strand at 416.666 kb on + strand at 416.666 kb on + strand at 416.667 kb on - strand at 416.705 kb on + strand at 416.706 kb on - strand at 416.708 kb on + strand at 416.708 kb on + strand at 416.708 kb on + strand at 416.708 kb on + strand at 416.708 kb on + strand at 416.709 kb on - strand at 416.709 kb on - strand at 416.709 kb on - strand at 416.777 kb on + strand at 416.778 kb on - strand at 416.780 kb on - strand at 416.803 kb on + strand at 416.803 kb on + strand at 416.874 kb on - strand at 416.875 kb on + strand at 416.876 kb on - strand at 416.876 kb on - strand at 416.954 kb on + strand, within EX28DRAFT_3108 at 416.999 kb on + strand, within EX28DRAFT_3108 at 416.999 kb on + strand, within EX28DRAFT_3108 at 417.000 kb on - strand, within EX28DRAFT_3108 at 417.152 kb on + strand, within EX28DRAFT_3108 at 417.153 kb on - strand, within EX28DRAFT_3108 at 417.153 kb on - strand, within EX28DRAFT_3108
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 414,144 - EX28DRAFT_3103 0.34 -1.0 414,191 - EX28DRAFT_3103 0.43 -1.8 414,329 - EX28DRAFT_3103 0.71 -0.6 414,354 - EX28DRAFT_3103 0.76 -1.5 414,511 - -1.4 414,849 + EX28DRAFT_3105 0.44 -1.9 414,894 + EX28DRAFT_3105 0.67 -1.8 414,905 - EX28DRAFT_3105 0.72 +0.6 414,905 - EX28DRAFT_3105 0.72 -1.8 414,918 + EX28DRAFT_3105 0.79 -0.6 415,018 - -2.5 415,046 - +0.1 415,079 - +0.3 415,090 + -0.3 415,090 + -0.1 415,232 + EX28DRAFT_3106 0.18 -0.6 415,320 - EX28DRAFT_3106 0.25 +0.3 415,513 - EX28DRAFT_3106 0.42 -0.1 415,628 - EX28DRAFT_3106 0.52 -0.8 415,664 - EX28DRAFT_3106 0.55 +1.6 415,718 - EX28DRAFT_3106 0.60 +4.6 415,921 + EX28DRAFT_3106 0.77 +0.3 415,921 + EX28DRAFT_3106 0.77 +0.2 416,030 - EX28DRAFT_3106 0.87 -1.7 416,081 - -0.0 416,125 + +0.1 416,126 - -0.4 416,132 - +0.0 416,132 - -1.3 416,284 - EX28DRAFT_3107 0.23 -0.5 416,295 + EX28DRAFT_3107 0.25 -0.4 416,301 + EX28DRAFT_3107 0.26 +0.3 416,317 - EX28DRAFT_3107 0.30 -0.6 416,364 + EX28DRAFT_3107 0.40 -0.3 416,365 - EX28DRAFT_3107 0.40 +0.3 416,396 - EX28DRAFT_3107 0.47 -2.3 416,480 - EX28DRAFT_3107 0.65 -0.6 416,480 - EX28DRAFT_3107 0.65 +0.0 416,480 - EX28DRAFT_3107 0.65 +1.6 416,493 + EX28DRAFT_3107 0.68 +0.5 416,520 - EX28DRAFT_3107 0.73 +0.4 416,594 + EX28DRAFT_3107 0.89 +1.3 416,660 + -2.6 416,661 - -1.1 416,661 - +1.5 416,661 - -0.4 416,662 + -0.2 416,662 + -0.5 416,662 + -0.3 416,662 + +0.0 416,662 + +0.1 416,663 - +1.1 416,663 - +1.4 416,663 - -0.6 416,663 - +0.4 416,666 + -0.6 416,666 + +0.0 416,666 + +0.8 416,666 + -1.1 416,666 + +3.9 416,667 - +0.6 416,705 + -1.1 416,706 - +1.8 416,708 + -0.6 416,708 + +0.6 416,708 + -1.2 416,708 + -1.9 416,708 + -2.5 416,709 - -1.9 416,709 - -0.5 416,709 - -0.5 416,777 + +0.0 416,778 - -0.2 416,780 - -0.5 416,803 + -1.7 416,803 + +0.8 416,874 - -0.6 416,875 + -0.7 416,876 - -2.7 416,876 - -2.9 416,954 + EX28DRAFT_3108 0.13 -1.2 416,999 + EX28DRAFT_3108 0.15 +0.8 416,999 + EX28DRAFT_3108 0.15 +0.1 417,000 - EX28DRAFT_3108 0.15 +0.8 417,152 + EX28DRAFT_3108 0.22 -1.7 417,153 - EX28DRAFT_3108 0.22 +1.0 417,153 - EX28DRAFT_3108 0.22 +0.2
Or see this region's nucleotide sequence