Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3070 and EX28DRAFT_3071 are separated by 27 nucleotides EX28DRAFT_3071 and EX28DRAFT_3072 overlap by 4 nucleotides EX28DRAFT_3072 and EX28DRAFT_3073 are separated by 204 nucleotides
EX28DRAFT_3070: EX28DRAFT_3070 - Predicted phosphohydrolases, at 380,953 to 381,780
_3070
EX28DRAFT_3071: EX28DRAFT_3071 - Uncharacterized protein conserved in bacteria, at 381,808 to 382,230
_3071
EX28DRAFT_3072: EX28DRAFT_3072 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 382,227 to 382,859
_3072
EX28DRAFT_3073: EX28DRAFT_3073 - type I secretion outer membrane protein, TolC family, at 383,064 to 384,542
_3073
Position (kb) 382
383 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 381.389 kb on - strand, within EX28DRAFT_3070 at 381.389 kb on - strand, within EX28DRAFT_3070 at 381.452 kb on - strand, within EX28DRAFT_3070 at 381.727 kb on + strand at 381.727 kb on + strand at 381.728 kb on - strand at 381.792 kb on - strand at 381.792 kb on - strand at 381.792 kb on - strand at 381.796 kb on - strand at 381.796 kb on - strand at 381.801 kb on + strand at 381.802 kb on - strand at 381.802 kb on - strand at 381.802 kb on - strand at 381.842 kb on - strand at 381.848 kb on + strand at 381.849 kb on - strand at 381.990 kb on - strand, within EX28DRAFT_3071 at 382.023 kb on - strand, within EX28DRAFT_3071 at 382.026 kb on + strand, within EX28DRAFT_3071 at 382.026 kb on + strand, within EX28DRAFT_3071 at 382.027 kb on - strand, within EX28DRAFT_3071 at 382.062 kb on + strand, within EX28DRAFT_3071 at 382.330 kb on + strand, within EX28DRAFT_3072 at 382.331 kb on - strand, within EX28DRAFT_3072 at 382.331 kb on - strand, within EX28DRAFT_3072 at 382.431 kb on - strand, within EX28DRAFT_3072 at 382.575 kb on + strand, within EX28DRAFT_3072 at 382.671 kb on + strand, within EX28DRAFT_3072 at 382.812 kb on + strand at 382.813 kb on - strand at 382.924 kb on + strand at 382.925 kb on - strand at 382.930 kb on + strand at 382.930 kb on + strand at 382.930 kb on + strand at 382.930 kb on + strand at 382.930 kb on + strand at 382.931 kb on - strand at 382.932 kb on + strand at 382.933 kb on - strand at 382.936 kb on + strand at 382.986 kb on + strand at 383.021 kb on + strand at 383.025 kb on + strand at 383.040 kb on - strand at 383.180 kb on - strand at 383.184 kb on - strand at 383.274 kb on - strand, within EX28DRAFT_3073 at 383.277 kb on + strand, within EX28DRAFT_3073 at 383.361 kb on - strand, within EX28DRAFT_3073 at 383.539 kb on + strand, within EX28DRAFT_3073
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 381,389 - EX28DRAFT_3070 0.53 -0.7 381,389 - EX28DRAFT_3070 0.53 -1.1 381,452 - EX28DRAFT_3070 0.60 -0.0 381,727 + -0.1 381,727 + +1.1 381,728 - +0.0 381,792 - +0.9 381,792 - -1.8 381,792 - -0.3 381,796 - +0.3 381,796 - -0.8 381,801 + +1.1 381,802 - -3.0 381,802 - -0.4 381,802 - -1.9 381,842 - -0.9 381,848 + -0.0 381,849 - -0.7 381,990 - EX28DRAFT_3071 0.43 -0.4 382,023 - EX28DRAFT_3071 0.51 -0.5 382,026 + EX28DRAFT_3071 0.52 +0.9 382,026 + EX28DRAFT_3071 0.52 +0.3 382,027 - EX28DRAFT_3071 0.52 -2.7 382,062 + EX28DRAFT_3071 0.60 -0.4 382,330 + EX28DRAFT_3072 0.16 +1.2 382,331 - EX28DRAFT_3072 0.16 -0.6 382,331 - EX28DRAFT_3072 0.16 -0.3 382,431 - EX28DRAFT_3072 0.32 +1.4 382,575 + EX28DRAFT_3072 0.55 +2.1 382,671 + EX28DRAFT_3072 0.70 -3.0 382,812 + +1.0 382,813 - -0.4 382,924 + +0.7 382,925 - +0.2 382,930 + -1.4 382,930 + +0.2 382,930 + +1.5 382,930 + +1.1 382,930 + +1.4 382,931 - +0.1 382,932 + -1.6 382,933 - +1.2 382,936 + -0.1 382,986 + -0.2 383,021 + +0.7 383,025 + -0.3 383,040 - -1.1 383,180 - -1.3 383,184 - +2.3 383,274 - EX28DRAFT_3073 0.14 -3.0 383,277 + EX28DRAFT_3073 0.14 -3.4 383,361 - EX28DRAFT_3073 0.20 -0.5 383,539 + EX28DRAFT_3073 0.32 -4.3
Or see this region's nucleotide sequence