Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3056 and EX28DRAFT_3057 are separated by 139 nucleotides EX28DRAFT_3057 and EX28DRAFT_3058 overlap by 4 nucleotides EX28DRAFT_3058 and EX28DRAFT_3059 are separated by 104 nucleotides EX28DRAFT_3059 and EX28DRAFT_3060 are separated by 31 nucleotides
EX28DRAFT_3056: EX28DRAFT_3056 - TIGR00156 family protein, at 366,988 to 367,389
_3056
EX28DRAFT_3057: EX28DRAFT_3057 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 367,529 to 368,188
_3057
EX28DRAFT_3058: EX28DRAFT_3058 - Signal transduction histidine kinase, at 368,185 to 369,534
_3058
EX28DRAFT_3059: EX28DRAFT_3059 - Putative NADPH-quinone reductase (modulator of drug activity B), at 369,639 to 370,220
_3059
EX28DRAFT_3060: EX28DRAFT_3060 - Uncharacterized conserved protein, at 370,252 to 370,566
_3060
Position (kb) 368
369
370 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 367.427 kb on + strand at 367.427 kb on + strand at 367.427 kb on + strand at 367.443 kb on - strand at 367.470 kb on + strand at 367.471 kb on - strand at 367.481 kb on + strand at 367.506 kb on - strand at 367.546 kb on - strand at 367.662 kb on - strand, within EX28DRAFT_3057 at 367.820 kb on + strand, within EX28DRAFT_3057 at 367.821 kb on - strand, within EX28DRAFT_3057 at 367.821 kb on - strand, within EX28DRAFT_3057 at 367.821 kb on - strand, within EX28DRAFT_3057 at 367.828 kb on + strand, within EX28DRAFT_3057 at 367.845 kb on + strand, within EX28DRAFT_3057 at 367.845 kb on + strand, within EX28DRAFT_3057 at 368.063 kb on + strand, within EX28DRAFT_3057 at 368.063 kb on + strand, within EX28DRAFT_3057 at 368.064 kb on - strand, within EX28DRAFT_3057 at 368.064 kb on - strand, within EX28DRAFT_3057 at 368.065 kb on + strand, within EX28DRAFT_3057 at 369.020 kb on + strand, within EX28DRAFT_3058 at 369.020 kb on + strand, within EX28DRAFT_3058 at 369.132 kb on - strand, within EX28DRAFT_3058 at 369.615 kb on + strand at 369.637 kb on + strand at 369.686 kb on + strand at 369.686 kb on + strand at 369.780 kb on + strand, within EX28DRAFT_3059 at 369.824 kb on - strand, within EX28DRAFT_3059 at 369.824 kb on - strand, within EX28DRAFT_3059 at 369.871 kb on + strand, within EX28DRAFT_3059 at 369.879 kb on + strand, within EX28DRAFT_3059 at 369.880 kb on - strand, within EX28DRAFT_3059 at 369.918 kb on + strand, within EX28DRAFT_3059 at 369.993 kb on + strand, within EX28DRAFT_3059 at 369.995 kb on + strand, within EX28DRAFT_3059 at 369.995 kb on + strand, within EX28DRAFT_3059 at 370.176 kb on + strand at 370.177 kb on - strand at 370.177 kb on - strand at 370.188 kb on + strand at 370.219 kb on - strand at 370.219 kb on - strand at 370.245 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 367,427 + -0.5 367,427 + +1.8 367,427 + +0.3 367,443 - -2.3 367,470 + +0.8 367,471 - -2.0 367,481 + -1.5 367,506 - +0.7 367,546 - +0.1 367,662 - EX28DRAFT_3057 0.20 +1.0 367,820 + EX28DRAFT_3057 0.44 -3.1 367,821 - EX28DRAFT_3057 0.44 -0.7 367,821 - EX28DRAFT_3057 0.44 -0.1 367,821 - EX28DRAFT_3057 0.44 -1.7 367,828 + EX28DRAFT_3057 0.45 +0.8 367,845 + EX28DRAFT_3057 0.48 -3.0 367,845 + EX28DRAFT_3057 0.48 -3.0 368,063 + EX28DRAFT_3057 0.81 +0.7 368,063 + EX28DRAFT_3057 0.81 -2.1 368,064 - EX28DRAFT_3057 0.81 -2.8 368,064 - EX28DRAFT_3057 0.81 +0.8 368,065 + EX28DRAFT_3057 0.81 -0.5 369,020 + EX28DRAFT_3058 0.62 -2.2 369,020 + EX28DRAFT_3058 0.62 -0.7 369,132 - EX28DRAFT_3058 0.70 -2.2 369,615 + -2.2 369,637 + +0.3 369,686 + -0.2 369,686 + +0.4 369,780 + EX28DRAFT_3059 0.24 +1.3 369,824 - EX28DRAFT_3059 0.32 -0.4 369,824 - EX28DRAFT_3059 0.32 +1.1 369,871 + EX28DRAFT_3059 0.40 -1.2 369,879 + EX28DRAFT_3059 0.41 +0.5 369,880 - EX28DRAFT_3059 0.41 -1.3 369,918 + EX28DRAFT_3059 0.48 -3.0 369,993 + EX28DRAFT_3059 0.61 -2.1 369,995 + EX28DRAFT_3059 0.61 -0.0 369,995 + EX28DRAFT_3059 0.61 -0.1 370,176 + -1.1 370,177 - -0.2 370,177 - -1.5 370,188 + -1.5 370,219 - -4.1 370,219 - -0.3 370,245 - -0.2
Or see this region's nucleotide sequence