Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3045

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3042 and EX28DRAFT_3043 are separated by 1 nucleotidesEX28DRAFT_3043 and EX28DRAFT_3044 are separated by 42 nucleotidesEX28DRAFT_3044 and EX28DRAFT_3045 are separated by 4 nucleotidesEX28DRAFT_3045 and EX28DRAFT_3046 are separated by 251 nucleotides EX28DRAFT_3042: EX28DRAFT_3042 - hypothetical protein, at 350,747 to 351,151 _3042 EX28DRAFT_3043: EX28DRAFT_3043 - hypothetical protein, at 351,153 to 351,602 _3043 EX28DRAFT_3044: EX28DRAFT_3044 - TonB system transport protein ExbD, group 1, at 351,645 to 352,070 _3044 EX28DRAFT_3045: EX28DRAFT_3045 - tonB-system energizer ExbB, at 352,075 to 352,806 _3045 EX28DRAFT_3046: EX28DRAFT_3046 - cystathionine beta-lyase, bacterial, at 353,058 to 354,245 _3046 Position (kb) 352 353Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 351.215 kb on + strand, within EX28DRAFT_3043at 351.216 kb on - strand, within EX28DRAFT_3043at 351.273 kb on - strand, within EX28DRAFT_3043at 351.273 kb on - strand, within EX28DRAFT_3043at 351.275 kb on + strand, within EX28DRAFT_3043at 351.275 kb on + strand, within EX28DRAFT_3043at 351.276 kb on - strand, within EX28DRAFT_3043at 351.369 kb on + strand, within EX28DRAFT_3043at 351.395 kb on - strand, within EX28DRAFT_3043at 351.395 kb on - strand, within EX28DRAFT_3043at 351.395 kb on - strand, within EX28DRAFT_3043at 351.395 kb on - strand, within EX28DRAFT_3043at 351.447 kb on + strand, within EX28DRAFT_3043at 351.447 kb on + strand, within EX28DRAFT_3043at 351.518 kb on + strand, within EX28DRAFT_3043at 351.718 kb on - strand, within EX28DRAFT_3044at 351.791 kb on + strand, within EX28DRAFT_3044at 351.792 kb on - strand, within EX28DRAFT_3044at 351.877 kb on + strand, within EX28DRAFT_3044at 351.878 kb on - strand, within EX28DRAFT_3044at 351.882 kb on - strand, within EX28DRAFT_3044at 351.882 kb on - strand, within EX28DRAFT_3044at 352.071 kb on - strandat 352.071 kb on - strandat 352.093 kb on - strandat 352.223 kb on + strand, within EX28DRAFT_3045at 352.223 kb on + strand, within EX28DRAFT_3045at 352.223 kb on + strand, within EX28DRAFT_3045at 352.223 kb on + strand, within EX28DRAFT_3045at 352.224 kb on - strand, within EX28DRAFT_3045at 352.642 kb on - strand, within EX28DRAFT_3045at 352.760 kb on + strandat 352.760 kb on + strandat 352.761 kb on - strandat 352.761 kb on - strandat 352.844 kb on + strandat 352.844 kb on + strandat 352.845 kb on - strandat 352.845 kb on - strandat 352.845 kb on - strandat 352.847 kb on + strandat 352.847 kb on + strandat 352.848 kb on - strandat 352.885 kb on + strandat 352.889 kb on - strandat 352.977 kb on + strandat 353.037 kb on - strandat 353.366 kb on + strand, within EX28DRAFT_3046at 353.431 kb on + strand, within EX28DRAFT_3046at 353.486 kb on + strand, within EX28DRAFT_3046at 353.663 kb on + strand, within EX28DRAFT_3046at 353.663 kb on + strand, within EX28DRAFT_3046at 353.688 kb on + strand, within EX28DRAFT_3046at 353.805 kb on + strand, within EX28DRAFT_3046at 353.805 kb on + strand, within EX28DRAFT_3046at 353.806 kb on - strand, within EX28DRAFT_3046at 353.806 kb on - strand, within EX28DRAFT_3046

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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351,215 + EX28DRAFT_3043 0.14 -0.9
351,216 - EX28DRAFT_3043 0.14 -0.5
351,273 - EX28DRAFT_3043 0.27 -1.3
351,273 - EX28DRAFT_3043 0.27 -0.0
351,275 + EX28DRAFT_3043 0.27 +0.5
351,275 + EX28DRAFT_3043 0.27 -0.8
351,276 - EX28DRAFT_3043 0.27 -0.0
351,369 + EX28DRAFT_3043 0.48 +3.4
351,395 - EX28DRAFT_3043 0.54 +2.3
351,395 - EX28DRAFT_3043 0.54 +0.9
351,395 - EX28DRAFT_3043 0.54 +2.3
351,395 - EX28DRAFT_3043 0.54 +0.0
351,447 + EX28DRAFT_3043 0.65 -0.2
351,447 + EX28DRAFT_3043 0.65 +0.1
351,518 + EX28DRAFT_3043 0.81 -0.1
351,718 - EX28DRAFT_3044 0.17 -2.2
351,791 + EX28DRAFT_3044 0.34 +2.7
351,792 - EX28DRAFT_3044 0.35 -1.4
351,877 + EX28DRAFT_3044 0.54 -2.0
351,878 - EX28DRAFT_3044 0.55 +0.4
351,882 - EX28DRAFT_3044 0.56 -0.2
351,882 - EX28DRAFT_3044 0.56 -2.4
352,071 - -1.0
352,071 - +1.1
352,093 - -1.4
352,223 + EX28DRAFT_3045 0.20 -1.3
352,223 + EX28DRAFT_3045 0.20 -1.4
352,223 + EX28DRAFT_3045 0.20 -3.7
352,223 + EX28DRAFT_3045 0.20 -1.3
352,224 - EX28DRAFT_3045 0.20 -3.7
352,642 - EX28DRAFT_3045 0.77 -2.0
352,760 + -2.7
352,760 + -0.7
352,761 - -1.3
352,761 - -2.8
352,844 + +0.5
352,844 + -2.9
352,845 - +0.3
352,845 - -1.5
352,845 - +1.0
352,847 + -3.3
352,847 + -1.1
352,848 - -0.9
352,885 + +0.2
352,889 - +0.9
352,977 + -0.8
353,037 - -0.4
353,366 + EX28DRAFT_3046 0.26 -2.6
353,431 + EX28DRAFT_3046 0.31 -0.2
353,486 + EX28DRAFT_3046 0.36 -0.4
353,663 + EX28DRAFT_3046 0.51 -1.7
353,663 + EX28DRAFT_3046 0.51 -2.2
353,688 + EX28DRAFT_3046 0.53 +1.0
353,805 + EX28DRAFT_3046 0.63 -0.3
353,805 + EX28DRAFT_3046 0.63 -0.9
353,806 - EX28DRAFT_3046 0.63 -0.8
353,806 - EX28DRAFT_3046 0.63 -0.1

Or see this region's nucleotide sequence